Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02402 ATGTCGTCTAGCACAGCTAGTAAGGTCATCAAGTGCAGAGCTGCGGTGGCATGGGAAGCAGGGAAGCCTCTAGTGATAGAAGAGATAGAGGTGGCGCCACCGCAGAGAGGTGAAGTGCGTTTGAAGATCCTCTTTAACTCTCTTTGCCGTTCTGATATTTACTGGTGGGAGGCAAAGGACCAGACTCCGCTGTTTCCACGTATCTTAGGTCATGAGGCTGCAGGGATTGTGGAAAGCATAGGAGAGGGTGTAACTCATCTCAAACCTGGTGACCATGCCCTCCCAGTGTTCACAGGGGAGTGTGGGGAATGCACACATTGCAAGTCAACCGAGAGCAACTTGTGTGAACTACTTGGTATCGACACTGATAGGGGAGTTATGCTCAGTGATGGCAAAACAAGATTTTCCAAAAATGGACAACCCATATACCACTTCGTGGGAACCTCTACTTTCAGTGAATACACTGTTGTCCATGCTGGATGTGTTGCAAAGATCAACCCTGCTGCTCCACTTGACAAAGTTTGTGTTCTCAGTTGCGGATTTTGTACAGGTTTTGGTGCTACTGTAAATGTTGCAAAACCAAAGCCTAATTCCTCTGTTGCTGTCTTTGGATTGGGAGCTGTTGGTCTTGCTGCTGCTGAAGGGGCAAGGGTTTCTGGTGCATCTAGGATCATTGGGGTTGATTTACTTCCGGACCGATTTGAACAAGCCAAAAAATTTGGGGTCACTGACTTTGTGAACCCGAAAGATCATGACAAACCTGTACAACAAGTCATTGCTGAAATGACTAATGGAGGAGTAGATTGTGCTCTTGAATGTACTGGAAACATCCAAGCTTCGATCTCAACATTTGAATGTGTTCACAATGGTTGGGGTGTTGCTGTACTTGTTGGTGTACCAACTAAGGATGCTGAGTTCAGAACTCATCCTATGAATTTCTTGGAAGGGAGAACTCTTAAGGGTACCTTTTATGGAAACTACAAACCCCGCACTGGACTTCCTTTAGTTGTGGAGAAGTACATGAACAAGGAGCTGGAACTGGACAAATTTATCACTCACTCTGTCCCATTCTCGGAAATTAATAAAGCATTTGAATTAATGCTGAAAGGGGAGGGCATAAGGTGCCTCATCTACATGGAAGAGTAA 1146 0.4555 MSSSTASKVIKCRAAVAWEAGKPLVIEEIEVAPPQRGEVRLKILFNSLCRSDIYWWEAKDQTPLFPRILGHEAAGIVESIGEGVTHLKPGDHALPVFTGECGECTHCKSTESNLCELLGIDTDRGVMLSDGKTRFSKNGQPIYHFVGTSTFSEYTVVHAGCVAKINPAAPLDKVCVLSCGFCTGFGATVNVAKPKPNSSVAVFGLGAVGLAAAEGARVSGASRIIGVDLLPDRFEQAKKFGVTDFVNPKDHDKPVQQVIAEMTNGGVDCALECTGNIQASISTFECVHNGWGVAVLVGVPTKDAEFRTHPMNFLEGRTLKGTFYGNYKPRTGLPLVVEKYMNKELELDKFITHSVPFSEINKAFELMLKGEGIRCLIYMEE. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02402 381 Pfam Alcohol dehydrogenase GroES-like domain 37 164 IPR013154 -
Seca7g02402 381 FunFam alcohol dehydrogenase 1-like isoform X1 20 183 - -
Seca7g02402 381 Pfam Zinc-binding dehydrogenase 207 327 IPR013149 -
Seca7g02402 381 PANTHER ALCOHOL DEHYDROGENASE 8 377 - -
Seca7g02402 381 FunFam Alcohol dehydrogenase class-P 184 322 - -
Seca7g02402 381 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Seca7g02402 381 Gene3D - 184 322 - -
Seca7g02402 381 SUPERFAMILY GroES-like 5 187 IPR011032 -
Seca7g02402 381 CDD alcohol_DH_plants 10 377 - -
Seca7g02402 381 Gene3D - 20 371 - -
Seca7g02402 381 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 170 343 IPR036291 -
Seca7g02402 381 SUPERFAMILY GroES-like 330 378 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02402 Seca-Chr7 57669149 57672430 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02402 38 371 Monolignol Biosynthesis Gene Families AT1G72680 25.223 7.10e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02402 K18857 - gmx:100775490 665.996