Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02367 ATGGGTCGTGCAAGAATAACCTTGAAACGAATCCAAAATGATAGAGCTCGCAAAGTAGCTTTTATGCAAAGACAGAAAGGGCTAATGAAGAAAGTATCTGAATTTACCACTATGTCTGGAGCTGAAGCATGCTTGATCGTGTATGATGATGGCAATTGTAATGCTGGACCAATGACTTTTCCCCAAGACTTCAGTGTGGTACACTCCATCCTTGAAAAGTTTGATCGTCAAAAGAATGAGAAAGCTCCTAAGAAATTTGATTTAGAAGATTTTTTTGAGAATAGGAAGGACATGCTTGAAGCTGAGATTTCCAAAGTTAAGAAAGAGATCCTCAACATCAAGTACCCAACTTGGGATCCAGTATTTTTCAATAACCTCAAAGTGGAGCAATTGAGCGCATTCATTGCTATGTTGGATACTAAGATTGAAGATTGTAATAAACGGATTAACATTCTGAAAAATAAGCAAGTTATCCCTGCTCCTGTGGAGCCAGTTAATGATAATAGTGGATTGGTGGATTTGATTAATCAATCTAACATGCCTTTGGACTCAGCGAACCAACTTAGTGAGCCCATGGGCTTGGGTGATCCACTGGGTGGGCTTGAGTATTTTGATGAATGGGCTAACTGTAATCAACTAGATGTTGAATTTCTTGGGTGGGCCAATCAACCTGATGAATCTTTTTGGCAGAATATTCCTTCTCAATCTCAGAGTGAGCAGAAAGGAGCTGCTTTTCTTCCCTTGCCACCGCCAAGTGAAGATGGATTTTAA 771 0.3982 MGRARITLKRIQNDRARKVAFMQRQKGLMKKVSEFTTMSGAEACLIVYDDGNCNAGPMTFPQDFSVVHSILEKFDRQKNEKAPKKFDLEDFFENRKDMLEAEISKVKKEILNIKYPTWDPVFFNNLKVEQLSAFIAMLDTKIEDCNKRINILKNKQVIPAPVEPVNDNSGLVDLINQSNMPLDSANQLSEPMGLGDPLGGLEYFDEWANCNQLDVEFLGWANQPDESFWQNIPSQSQSEQKGAAFLPLPPPSEDGF. 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02367 256 Coils Coil 89 109 - -
Seca7g02367 256 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Seca7g02367 256 PANTHER MADS BOX PROTEIN 3 149 - -
Seca7g02367 256 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca7g02367 256 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca7g02367 256 Coils Coil 135 155 - -
Seca7g02367 256 MobiDBLite consensus disorder prediction 228 242 - -
Seca7g02367 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Seca7g02367 256 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Seca7g02367 256 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca7g02367 256 MobiDBLite consensus disorder prediction 228 256 - -
Seca7g02367 256 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Seca7g02367 256 CDD MADS_SRF_like 2 73 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02367 Seca-Chr7 56268795 56269565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02367 1 177 Type I MADS-box Gene Family AT5G55690 30.055 2.75e-18 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca7g02367 SRF-TF 4.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02367 - - ccaj:114915062 204.912