Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02356 ATGGGAAGGGGTAAGATCGAGATCAAGAGGATCGAGAACTCAAGCAACAGGCAAGTTACTTATTCAAAGAGAAAGAATGGGATCCTAAAGAAAGCGAAGGAAATCACTGTTCTATGTGATGCTCAAGTTTCCCTTATCATCTTTGCTGCTTCTGGAAAGATGCATGACTACATAAGCCCTTCTACCACGTTGATTGACATCTTGGAGAGATACCACAAAACCTCAGGGAAGAGGCTCTGGGACGCTAAGCATGAGAACCTAAACGGCGAAATTGAGAGACTCAAGAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAAGGAGACGATATCAACTCACTGAACTACAAGGAATTGATGAGCTTAGAGGATGCCTTAGAAAATGGTCTCCTCAGTGTCCGCGAGAAACAGATGGAAGTATACAGGATGTTCAGGAGAAATGTATGTTTAACTCTCTGA 465 0.4301 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPSTTLIDILERYHKTSGKRLWDAKHENLNGEIERLKKENDSMQIELRHLKGDDINSLNYKELMSLEDALENGLLSVREKQMEVYRMFRRNVCLTL. 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02356 154 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca7g02356 154 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca7g02356 154 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca7g02356 154 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca7g02356 154 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca7g02356 154 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Seca7g02356 154 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Seca7g02356 154 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Seca7g02356 154 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca7g02356 154 ProSiteProfiles K-box domain profile. 84 154 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca7g02356 154 Pfam K-box region 82 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca7g02356 154 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 138 - -
Seca7g02356 154 Coils Coil 77 111 - -
Seca7g02356 154 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02356 Seca-Chr7 55530458 55532925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02356 1 143 MADS-box Gene Family AT5G20240 67.133 8.40e-68 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca7g02356 K-box 2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02356 K09264 - gmx:100817554 287.345