Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02355 ATGGAGGAGGATATGGAAATTGATCATATTGTGGATGTTCCTGATACCCCAGATAGATTAAATGCTGGGCATGATAATCGGAAATATGTAGGTAATCCTGAGAAGAGGGAGAGGACTTTTTCTGCTGCTAATGAAATGAGTAACTGCAGCAACTACATAACAGTGTCCCCATCAGACAAATCCCATCCTTCTAAAAATGCTCCCATCTTTAGGAGAGCTCAAACTGAGAAATTTTCTGGTCTGGGCACAAGCACAACACACTCTAATGGAACTGAAAGGGTGGACAAAGGGAAAACTATAAGCTCTAAATTTCCTTCTAAATCATCTCACCATGGACCTATTTCTATTTTAGATTTGACGGGAGAGAATAGACAGTTCCAACAACGGAAACCAACTTTCTCACATCGTGGATCAAGAGATAATACAACTGAAAACAAGAAAGTACCAAAATTAAGTATTGGGAACTCTTCATTACCTTTCATCACTGATTCTTCTAACACATCTAGTAATGCCTTCACTGGAAAGTGTAAACTAGATGACAAAACACTTCCAGGTCCTAATATAGCTATGGACCGTGGCAAGAGCATTTCTCTGTCTAATGATTCTCATTCTCAATCAAAAACTGAAAAGCAAGTGTCTTTGCCTCCTTGTCTTTCCACCACTCCAAGAGGTAGAGGGCACAAGAGATTGGTACGAAATGGGTGCATTTCACCACAGAATATTGCAACAAGAGCAAAACAATCAGTTGAACAGAGCAGCCTTCAAACCAATCATGTTGAACAGAACCATTCTGGGCATTCAGTTTCTAGCAATACAATGTCACCGATTAGTATTGATGATATAGTTTCTGAAAAGAGAGATAGTGGTAGAAGGAAAGGAAAGGAAGTACTTATTCATCCTTCATCACATGGACTGAATGCTGGAACTATTCAAACCACTAGCAGCCTAATGATCAATCATGAAGATGCCAATGTTACTCGTAATACTATAAGAAACCCTGAGGGACAAGGTGGTTGGAGAACTACACATAATGAGAAGAATGCTGATCAACACTTGTATGATGTAAATGAGCATCATTCAAGGAGAAATTATGATTCTGGAAGATTTATTAACAGACAGAATATGAACAGAATGGGCAGAAGAGACACTGGGAGCAGTCAAAATGGTGAGGATGCTCATGCTTCTCTATTAGATCATACACCTCGACCAACTTTGCTGATCATTCCGGAGGAAGACCAGTCAACTAGACCTCGTCCTCCTGCTGACACACTGACTAAAAGGCAAAGGAAACGTGGTTCAACTTCGGGAAATCCTAATGAGGCATCTCATAATACTGAAATTATGTTCCTCAATTCATCTGGAGAGTCATCAGGCTCATCGCGAAACCGTGTCTCGGATCCAGAAGTGATTGAGTTGTTATCCACACCGAGGTACATCAACAGAATTTCTGAAGATTTAGATGACAATGACAATAATAGCTTGGATGCTCGGGCAAGACAAGTAGAAGCAGATGAGATATTGGCACGTGAGCTCCAAGAACAACTTTATCATGATGATTTTTCTGAAGGCAGAGGGTTTGATGAACATTTAGCCTGGGAGCTGCAGCATGCAGAGGATCTTGGGCATACATCTAATGATAGTCACCATATATCTCATCCTACATGGTTTCCAAGGGCAAATAGACAGCCCCGTTCACGGACTCATCAAAATCCATCAAATAGGAGGAGAACTGTGCCTCAAGTTCCTTTCTCTAATAGAATGTCACAATTAAGGAGTCGCATCGGCATTGCAAGTCGGACTCGGTCATCAACTCCTATCATGGCATCTAGAGGAAGACGCCCCCGGTTTCCTCTGGATATGGACTTAGACATGAGACTTGACATACTGGAAGCATTAGAAGATGCAGTAGGGGATCTTAATGATATGGGAATGACTGATGACATCTTTCATGCTCACCGTGATTTCAATGAAGATGATTATGAAATGTTATTAGCCCTTGATGAGCAAAATCACCAGCATACTGGTGCAACTGCCAATCAGATCAATAGTTTGCCACAGTCCACCATCCAGACTGACAACTTCACAGAGGCATGTGCCATATGTCTTGAGACCCCAGTCAAGGGAGAAATTATTCGCCACCTTCCTTGTTTGCACAAATTTCACAAAGATTGCATTGATCCTTGGCTCCGTAGGAAAACTTCATGCCCCGTGTGCAAGTCTTCTATCACCTAA 2232 0.4153 MEEDMEIDHIVDVPDTPDRLNAGHDNRKYVGNPEKRERTFSAANEMSNCSNYITVSPSDKSHPSKNAPIFRRAQTEKFSGLGTSTTHSNGTERVDKGKTISSKFPSKSSHHGPISILDLTGENRQFQQRKPTFSHRGSRDNTTENKKVPKLSIGNSSLPFITDSSNTSSNAFTGKCKLDDKTLPGPNIAMDRGKSISLSNDSHSQSKTEKQVSLPPCLSTTPRGRGHKRLVRNGCISPQNIATRAKQSVEQSSLQTNHVEQNHSGHSVSSNTMSPISIDDIVSEKRDSGRRKGKEVLIHPSSHGLNAGTIQTTSSLMINHEDANVTRNTIRNPEGQGGWRTTHNEKNADQHLYDVNEHHSRRNYDSGRFINRQNMNRMGRRDTGSSQNGEDAHASLLDHTPRPTLLIIPEEDQSTRPRPPADTLTKRQRKRGSTSGNPNEASHNTEIMFLNSSGESSGSSRNRVSDPEVIELLSTPRYINRISEDLDDNDNNSLDARARQVEADEILARELQEQLYHDDFSEGRGFDEHLAWELQHAEDLGHTSNDSHHISHPTWFPRANRQPRSRTHQNPSNRRRTVPQVPFSNRMSQLRSRIGIASRTRSSTPIMASRGRRPRFPLDMDLDMRLDILEALEDAVGDLNDMGMTDDIFHAHRDFNEDDYEMLLALDEQNHQHTGATANQINSLPQSTIQTDNFTEACAICLETPVKGEIIRHLPCLHKFHKDCIDPWLRRKTSCPVCKSSIT. 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02355 743 MobiDBLite consensus disorder prediction 327 346 - -
Seca7g02355 743 FunFam RING/U-box superfamily protein 663 743 - -
Seca7g02355 743 MobiDBLite consensus disorder prediction 247 308 - -
Seca7g02355 743 PANTHER SI:CH211-59O9.10 238 743 - -
Seca7g02355 743 MobiDBLite consensus disorder prediction 367 393 - -
Seca7g02355 743 MobiDBLite consensus disorder prediction 327 343 - -
Seca7g02355 743 Pfam Ring finger domain 697 739 IPR001841 -
Seca7g02355 743 MobiDBLite consensus disorder prediction 73 151 - -
Seca7g02355 743 MobiDBLite consensus disorder prediction 430 445 - -
Seca7g02355 743 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 743 IPR013083 -
Seca7g02355 743 MobiDBLite consensus disorder prediction 280 298 - -
Seca7g02355 743 MobiDBLite consensus disorder prediction 357 445 - -
Seca7g02355 743 CDD RING-H2_PA-TM-RING 698 739 - -
Seca7g02355 743 ProSiteProfiles Zinc finger RING-type profile. 698 739 IPR001841 -
Seca7g02355 743 SMART ring_2 698 738 IPR001841 -
Seca7g02355 743 MobiDBLite consensus disorder prediction 193 218 - -
Seca7g02355 743 MobiDBLite consensus disorder prediction 247 278 - -
Seca7g02355 743 MobiDBLite consensus disorder prediction 558 580 - -
Seca7g02355 743 MobiDBLite consensus disorder prediction 543 580 - -
Seca7g02355 743 MobiDBLite consensus disorder prediction 178 228 - -
Seca7g02355 743 SUPERFAMILY RING/U-box 697 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02355 Seca-Chr7 55491170 55502446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02355 653 739 C3H Transcription Factor Family AT3G55530 37.815 1.46e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02355 - - aprc:113872307 1073.54