Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02349 ATGCTGGATATTTGTGTTCTTGACTGTTCTCACGCTCCTGAAGGTGACAAATATAAGGTGGCAAAACGTTGGGGCCACATTCATATTGTGACTACAAAATGGTTTGATCAATCTATTGCTCGAAGAGCATGTCTGAATGAGGAATCCTACCCTGTTCAAAATGGATCTGTATCTTCACATAAAGTAACTAGGGGCTCAACAGTGCAACATAGCCAAGAAAAAGATGTGTGTATGGATAGAGATCTAGAAGCTACACAAACCTCTGTTTCAAATATTCCTTTATCTGTTAAAGAGGCAGATGCTGAAGCACCTCCATTACCTTCCAGCAATGAATTGAACTTTGATGGTGCTGTTGCCTATGATTCTGAGTCTGATGATAATGGCCTGTACTTATCAGAGTGCAGAATACTACTTGTTGGCTTTGAAGCTTCTCAAATGCGAAAATTAGTTAATATGGTGCGTAAAGGTGGAGGCTCCCGATATATGTCTTTTAATGACAAGTTGACACACATAGTTATTGGGAATCCTACAGAAATGGAAAAGAAGGATGTAAGGAGTCTTGCTGCATTGGGTGTTATTTATGTTGTTAAAACCTCATGGCTTGAAGATTGTGACCGTGAAAAGAAACAAGTCCCTGTTCATCGGAGACACATTGCAAATGATCTACTTCTTCCAAAAGCTAGCTTAGTAAAAGGAGCAGTAACAGGCATTATGTCCATGGATCAAGGTAAAAGCTCTGGCTTTCATCAAAGCTTGCAGACTGATCAGGTGGTGGGTATTATAGACTCTAGAGTTGTAATGCCAGAATCCTTGGAGAAAAATAAAGAAAAATCAGATATGGATATAAATGTTCTCACATTCGGTAAAGCAAAGGGAAGAACAATGCTGCAAAACCAACTTCCTGATAATAAATTGAGGGTACAAAAGATGACACAACATGACTCCAGTGTTCAACATGTGAAGCCAACAAATGTTTTTAGAGGGAAAACATTTTGTTTCTCAAATTTATTTCCTGAAGAAAGGAGAGCTGAGATTGTTCAGTGGATAATTCAAGGGGGAGGAAAGATAATTAATGGGCAAACAAAACAGAGTGTCCACTATACTATTGAGTGTCATGGTTTAACACCCAGGTTGACAGGTGATTGTGAAAGTACGCATATTTCCAGTCACTGGATACGGTCTTGTTTGGAGGATGGGTCCCTGCTGGATGTTCACAGTCACATTCTTTATTCTCCACTTCCTTGCCATGTTCCCTTGCCTGGGTTTGAAAGTTTCCGGTTTTGTGTTTCACAATATGAGGAGAAAGACAGAATTCTACTCAGGAACTTGTGTTTTGTTCTTGGAGCTAAATTTGTGGAAAGGTTGACTAAGAAGGTCACCCATTTATTGTGTAAATTCACCAATGGGCCCAAGTATGAGGCTGCTTGTAAGTGGGGGATTCGATCAGTTACATCTGAATGGATATTTGAATGTGTCAAACAGAATGGAGTTATTGCCATTGATCAATTTTTACCCAAAGAAGTGACTGCTCAAGACCAAGAGGCAGGGCTTTGCACCGTGAGTCAATTTCCTACCCAGGCTGTTCAAATGATTAGTGACATGCCCTCCCAGTTTCCAAGTCAATCCCAAAATTTGGTAAACACGACAAATAAAAATGTAGGTGGTGAAATGGAGAATAATCATGCAACTGATTCTAAAGTATCAAATATTTATAGCAAAAAGGCAAGGCTTGTGGACGAACCTGGCCTGTATGATAAGGTGCCTTCAGTAAATTCAGGTACTCATGTCTATGACATGAACTTTTCTAAAGACAATATGCTTAAAGATACTGGGGAGGTTTCTCATGCTGTTCCCGATGTTGCTGCTGCAATCGAGGACTTGTTAGAGCAGACAAGTAAGATGCATGATCAGAGGTCCCCAGGGAATACCGGCTGTCAGAGAAGTGTATCCTTAAGTATGATAAATTTCATTGAGATATACTCATCTGATTGTTCGGTCCTTGGTAAAGACAATTCAAATCCTCATACTGTCTTTGGGTTATCTAGACACTGTTTAAACAGAAGTGGCAGAAAAGATGATAATGGTGAGGCTTCTGAAGACAGAAGTGCAGCAACATATTATGGTTTTAGTGAAACACAGACAGAATCTCAGGTTGTTAGTTATGAAGAAGATTTGTCAGGAAGGCAAATGCTTATAGATAGAGTTCGAATTCGAAGTAGCATGCAATGA 2229 0.397 MLDICVLDCSHAPEGDKYKVAKRWGHIHIVTTKWFDQSIARRACLNEESYPVQNGSVSSHKVTRGSTVQHSQEKDVCMDRDLEATQTSVSNIPLSVKEADAEAPPLPSSNELNFDGAVAYDSESDDNGLYLSECRILLVGFEASQMRKLVNMVRKGGGSRYMSFNDKLTHIVIGNPTEMEKKDVRSLAALGVIYVVKTSWLEDCDREKKQVPVHRRHIANDLLLPKASLVKGAVTGIMSMDQGKSSGFHQSLQTDQVVGIIDSRVVMPESLEKNKEKSDMDINVLTFGKAKGRTMLQNQLPDNKLRVQKMTQHDSSVQHVKPTNVFRGKTFCFSNLFPEERRAEIVQWIIQGGGKIINGQTKQSVHYTIECHGLTPRLTGDCESTHISSHWIRSCLEDGSLLDVHSHILYSPLPCHVPLPGFESFRFCVSQYEEKDRILLRNLCFVLGAKFVERLTKKVTHLLCKFTNGPKYEAACKWGIRSVTSEWIFECVKQNGVIAIDQFLPKEVTAQDQEAGLCTVSQFPTQAVQMISDMPSQFPSQSQNLVNTTNKNVGGEMENNHATDSKVSNIYSKKARLVDEPGLYDKVPSVNSGTHVYDMNFSKDNMLKDTGEVSHAVPDVAAAIEDLLEQTSKMHDQRSPGNTGCQRSVSLSMINFIEIYSSDCSVLGKDNSNPHTVFGLSRHCLNRSGRKDDNGEASEDRSAATYYGFSETQTESQVVSYEEDLSGRQMLIDRVRIRSSMQ. 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02349 742 Pfam BRCT domain, a BRCA1 C-terminus domain 323 406 IPR001357 -
Seca7g02349 742 SUPERFAMILY BRCT domain 387 506 IPR036420 -
Seca7g02349 742 CDD BRCT_TopBP1_rpt2_like 420 495 - -
Seca7g02349 742 Gene3D BRCT domain 319 415 IPR036420 -
Seca7g02349 742 Gene3D BRCT domain 4 55 IPR036420 -
Seca7g02349 742 Pfam twin BRCT domain 426 487 IPR001357 -
Seca7g02349 742 Gene3D BRCT domain 416 510 IPR036420 -
Seca7g02349 742 FunFam Transcription coactivator 108 218 - -
Seca7g02349 742 FunFam Transcription coactivator 318 415 - -
Seca7g02349 742 SUPERFAMILY BRCT domain 323 411 IPR036420 -
Seca7g02349 742 SMART BRCT_7 323 399 IPR001357 -
Seca7g02349 742 SMART BRCT_7 128 208 IPR001357 -
Seca7g02349 742 SMART BRCT_7 419 495 IPR001357 -
Seca7g02349 742 ProSiteProfiles BRCT domain profile. 321 409 IPR001357 -
Seca7g02349 742 SUPERFAMILY BRCT domain 130 213 IPR036420 -
Seca7g02349 742 Gene3D BRCT domain 118 217 IPR036420 -
Seca7g02349 742 SUPERFAMILY BRCT domain 12 57 IPR036420 -
Seca7g02349 742 ProSiteProfiles BRCT domain profile. 1 52 IPR001357 -
Seca7g02349 742 ProSiteProfiles BRCT domain profile. 422 505 IPR001357 -
Seca7g02349 742 ProSiteProfiles BRCT domain profile. 126 218 IPR001357 -
Seca7g02349 742 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 11 740 - -
Seca7g02349 742 Pfam BRCA1 C Terminus (BRCT) domain 127 204 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02349 Seca-Chr7 55293628 55302768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02349 9 741 Core DNA Replication Machinery Family AT1G77320 44.797 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02349 K10728 - gmx:100804966 989.178