Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02340 ATGTCCCTCTTCACCAATTCCATATCTAATGCTGCATCTTCCTCATGTCCCATGGATCTCAGCTATGTTGAGACCTTTCCTTGGGACACTTCAACCTGCAGATCTCCAATTGATACACAACACTGTTGCCAAACCCTTCTCAGCCTCTTTGGCATAGGGCTTGCCCAGCACCTCAAAGAAACTTCCCTGTTTCAACTTCCTGATGAAAACACTTCCTCCACTTGCTTATCTGATTTCAAAGTCAAGCTTGCAGCTTTATCAATCCAACCATCTTTGGTCCATTCTTGCTTCCCTAACTCTGCACAATTTGTTACTAACTCTTCCAATTGTGCAGGAATTAAAACTGTTCAAGATTGGAAACAAAAGGTTGGCATAATGAGCCCATTAGAAAGGTACTGTGATGGGGACCTGAAAGATCTAACCCACTGCGACATTTGCACTGATGCTGGCCTTAAAGTGACTTCCCAGCTGAATAGTATTGACCCAAATGCCACAATGTGTTTTTACTTCACAACCTTGTATGCTGCAGCTGTTGTTAATCCGTTTGGTACAACAGATGTGAGTGCAACTAGTTGTATACTAGGCATGCAACTGTCTAGTTCAGCAGCATCAAATGGATCATCAAACAGAGGACAAGGTTTGACTCTGAAGCTAGTTTTTGCATTATTGGGTGCTGTAATTGGTGTTCTGCTTGCTTTTGCATTGATAATCATGTACAGGAAGTGGGATAAGAGAAGGAAGGAAGATCTTTATCACAGGAATATTGAAAATGGTGTCAAGGCCAGTGTTTTGCCTAATGCTGGTGCAAAATGGTTCCATATATCAGAGCTTGAAAAGGCATCAAATAGATTTGCACAGAAGAATGTGATTGGTCAAGGTGGTGATGGGATTGTGTACAAAGGGACTCTTTCAGATGGAACTGTGGTGGCAATTAAGGAAATGCTTGATTTGGACACAAAAGGGGATGAAGAGTTCTGCTATGAAGTGGAGATTATAAGCAAAATAAAGCACAGGAATCTTGTTGCTCTTAGGGGTTGTTGTGTTTCAAGTGATAATTTGAAAGGTAAGAGGAGGTTTTTAGTTTATGATTTTATGCCTAATGGGAACCTCAGTTACCAATTATCTCTTGTTGGAGCTAATAGGCTAATGTGGCCACAAAGGAAGAACATAGTCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCATTATGAAATCAAACCCCCAATTTATCACCGTGACATAAAGGCTACTAACATACTTTTGGATTCCAAAATGAGTGCTAAATTGGCAGATTTTGGGTTGGCAAAGCAAGGTAATGAAGGGCAGTCTCATCTCACCACAAGGGTTGCTGGCACATATGGTTATGTAGCACCAGAATATGCTCTATATGGGCAACTAACAGAGAAAAGTGATGTCTATAGTTTTGGTATTGTGATTCTTGAGATCATGAGTGGAAGAAAAGTGCTTGATACTTTGAATTCATCTGTGGTTTCAATCACAGATTGGGCATGGACACTTGCAGAATCAGGGAAGATGAAGGAAATTCTTGATCAGTCAATAAGAGAAGAAGGGCCAGAAAAAATCATGGAAAGGTTTGTTCTTGTTGGAATGCTTTGTGCTCATACAATGGTGGTGTTAAGGCCTACGATAGCAGAGGCACTCAAGATGTTAGAGGGTGACATTGATATTCCTAATTTACCAGACAGGCCAGTACCACTGAGTCATGCATCGTTTCAATCTTCTCTGCTGCATAGTTTGAAAAGGGGAGAAAGATCTATACATGTTTCATCTTAG 1794 0.4091 MSLFTNSISNAASSSCPMDLSYVETFPWDTSTCRSPIDTQHCCQTLLSLFGIGLAQHLKETSLFQLPDENTSSTCLSDFKVKLAALSIQPSLVHSCFPNSAQFVTNSSNCAGIKTVQDWKQKVGIMSPLERYCDGDLKDLTHCDICTDAGLKVTSQLNSIDPNATMCFYFTTLYAAAVVNPFGTTDVSATSCILGMQLSSSAASNGSSNRGQGLTLKLVFALLGAVIGVLLAFALIIMYRKWDKRRKEDLYHRNIENGVKASVLPNAGAKWFHISELEKASNRFAQKNVIGQGGDGIVYKGTLSDGTVVAIKEMLDLDTKGDEEFCYEVEIISKIKHRNLVALRGCCVSSDNLKGKRRFLVYDFMPNGNLSYQLSLVGANRLMWPQRKNIVLDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMSAKLADFGLAKQGNEGQSHLTTRVAGTYGYVAPEYALYGQLTEKSDVYSFGIVILEIMSGRKVLDTLNSSVVSITDWAWTLAESGKMKEILDQSIREEGPEKIMERFVLVGMLCAHTMVVLRPTIAEALKMLEGDIDIPNLPDRPVPLSHASFQSSLLHSLKRGERSIHVSS. 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02340 597 SUPERFAMILY Protein kinase-like (PK-like) 269 576 IPR011009 -
Seca7g02340 597 Pfam SPARK 11 167 IPR043891 -
Seca7g02340 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Seca7g02340 597 SMART serkin_6 284 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02340 597 ProSiteProfiles Protein kinase domain profile. 284 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02340 597 Pfam Protein kinase domain 285 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02340 597 Gene3D Phosphorylase Kinase; domain 1 247 364 - -
Seca7g02340 597 PANTHER OS01G0750732 PROTEIN 33 570 - -
Seca7g02340 597 CDD STKc_IRAK 290 559 - -
Seca7g02340 597 Gene3D Transferase(Phosphotransferase) domain 1 365 563 - -
Seca7g02340 597 FunFam Receptor-like serine/threonine-protein kinase At4g25390 249 364 - -
Seca7g02340 597 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 365 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02340 Seca-Chr7 55002376 55004169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02340 5 579 Receptor kinase-like Gene Family AT1G11050 51.597 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Seca7g02340 Pkinase 1.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02340 - - gmx:100820563 930.628