Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02326 ATGGACTTCACATTGGACTTGAATCCTCTTAGTGATGACAAAAATGAAATAATTGAAGATTGCCTTCCAAACATGGAGGAGGAGGAGGGCGATACTGCCGTGTATAGTAGTTACATTGAGGCAGCTGAGAAATCTATTTCTAAAAAGATCATATTTGCGGAGAAAAACTTCACTGTTTGGGATGAATCTAACATCAAGCGGCTTCAAGAGGCCGATATCAATCAGGTTTCATATGTTCTTTCAATATCAAAATTTGCTGCTTGCCTTTTGCTCCGTCACTGTGAGTGGAACGTGACTAAAGTGCTTGAAGCATGGATTGATAATGAAGAAAGAGTTCGCAACGCTGTAGGGTTGCTTAAACAGCCCCAGGTAAATTTTTCCAGCTCAGAAATTTTCATGTGTGGGATCTGTTTCGAAACCCTTTGTGGTGATAAGATTAGGTCAGCAGGGTGTGGCCATCCATTTTGTATGATTTGTTGGAAGCGCTATGTGGATACAAAGATTGATGAGGGTCCTTTTAAGTGCTTGACATTTAGATGCCCCGAACCCTCTTGTGGTGCAGCTGTGGACGGAGACATGGTTCACGAACTTGCAAGTGAATCAAGTAAGAAAAGGTACGATCAATTTTTGTTCCGGTCTTATGTTGAAAACAATAAGAAGATTAAGTGGTGTTCTGCTCCTGCTTGTGGGTATGCCGTATGTTTTGAAGCTGAAGGTTATAGAAAAATTTTCGATGTTACATGTCTTTGTTATCATAGTTTTTGTTGGAGATGTGGGGAAGAAGCTCATGGGCCTGTGGATTGTGAAACAGCACATCAATGGATAAGAAAGAATAAGACTGAATCTGAAATTGTTGATTGGCTTGTTGCTCACACTAAACCATGTCCTCAGTGCAAGATACCAATTGAGAGAAGTGCAGGGTCCACACACATGATGTGTAATTGTGGATTTCAATTTTGTTGGTTATGTCTCGGTGATTGGTTTGCTTTTATACCTTGCAAATTCCATAATAATCAGTTTCAAGAGACTAGCAAGAAGGAAATAGAAAGTAAGATGTCAAAGGGTTATTATGATCATTGGGCTAGAAATGATGTTTTAAGAAAGAATGTCATTGAAAATTTGATTTACCTTACACCTATAACAACACTGTGTAAGTTTTTTCAAAGGCCTGAAACTGATTTTAATTTTATAATTAAGGCTTGGAAACAAGTGATTGAATGTAGAGGGATACTAAAATGGTGCTATACATATGGATATTATCTCCCTAATAATATAAAGGTCAAGAAGGACTTTTTTGAGTACATCCAACATAAGGCTGAGGTTACTTTCGAAAAGCTTGATCAATGTGTAGGAATGGAACTGAGAGAGTATCTAAATGTTGAGCGAAAAGATGAATTTAATGAATTTTCTTTGAAGCTAGTCAATTTGACTAATGTGACCAAGAACTATTTTTACAAGTTGGTGAAAGCGTTAGAGGATGGGCTTGTTGATGTGCATGTGAACGACGATACGAGTATGAAAAGAAAATCAAGTGAGATAAGCAAAACCTCTTATCGAAGGGGAACCAAGAGAATAGTTACCATTGATGGACTGGCCAAAAATGATCTCTGGCAATGTGAAGCATGTGGCCAATACAATTCTATCTCTTCTCTTGTGTGTCAGGATATTAATTGCAGACAATACTTTGATTAG 1692 0.3794 MDFTLDLNPLSDDKNEIIEDCLPNMEEEEGDTAVYSSYIEAAEKSISKKIIFAEKNFTVWDESNIKRLQEADINQVSYVLSISKFAACLLLRHCEWNVTKVLEAWIDNEERVRNAVGLLKQPQVNFSSSEIFMCGICFETLCGDKIRSAGCGHPFCMICWKRYVDTKIDEGPFKCLTFRCPEPSCGAAVDGDMVHELASESSKKRYDQFLFRSYVENNKKIKWCSAPACGYAVCFEAEGYRKIFDVTCLCYHSFCWRCGEEAHGPVDCETAHQWIRKNKTESEIVDWLVAHTKPCPQCKIPIERSAGSTHMMCNCGFQFCWLCLGDWFAFIPCKFHNNQFQETSKKEIESKMSKGYYDHWARNDVLRKNVIENLIYLTPITTLCKFFQRPETDFNFIIKAWKQVIECRGILKWCYTYGYYLPNNIKVKKDFFEYIQHKAEVTFEKLDQCVGMELREYLNVERKDEFNEFSLKLVNLTNVTKNYFYKLVKALEDGLVDVHVNDDTSMKRKSSEISKTSYRRGTKRIVTIDGLAKNDLWQCEACGQYNSISSLVCQDINCRQYFD. 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02326 563 ProSiteProfiles TRIAD supradomain profile. 130 342 IPR044066 -
Seca7g02326 563 Pfam IBR domain, a half RING-finger domain 285 327 IPR002867 GO:0008270
Seca7g02326 563 Pfam IBR domain, a half RING-finger domain 204 268 IPR002867 GO:0008270
Seca7g02326 563 ProSiteProfiles Zinc finger RING-type profile. 134 181 IPR001841 -
Seca7g02326 563 SMART ibrneu5 204 268 IPR002867 GO:0008270
Seca7g02326 563 SMART ibrneu5 272 333 IPR002867 GO:0008270
Seca7g02326 563 SUPERFAMILY RING/U-box 128 216 - -
Seca7g02326 563 Gene3D - 264 498 - -
Seca7g02326 563 CDD BRcat_RBR_ANKIB1 212 277 - -
Seca7g02326 563 SUPERFAMILY RING/U-box 278 336 - -
Seca7g02326 563 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 217 IPR013083 -
Seca7g02326 563 SUPERFAMILY RING/U-box 205 275 - -
Seca7g02326 563 FunFam RBR-type E3 ubiquitin transferase 128 218 - -
Seca7g02326 563 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 66 413 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02326 Seca-Chr7 54416896 54418587 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02326 54 554 ARIADNE family AT1G65430 44.061 3.61e-149 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02326 K11968 - gmx:100801350 505.753