Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02325 ATGGACTTCACATTGGACTTGAATCCTCTTAGTGATGACAAAAATGAAATAATTGAAGATTGCCTTCCAAACATGGAGGAGGAGGAGGGCGATACTGCCGTGTATAGTAGCTACATTGAGGAAGCTGAGAAATCTATTTCTACAAAGATCATATTTGCGGAGAAAAACTTCACCGTTTTGGATGAATCTAACATCAAGCGGCTTCAAGAGGCCGATATCAATCAGGTTTCATATGTTCTTTCAATATCAAAATTTGTTGCTTGCCTTTTGCTCCGTCACTGTGAGTGGAACGTGACTAAAGTGCTTGAAGCATGGATTGATAATGAAGAAAGAGTTCGCAACGCTGTAGGGTTGCTTAAACAGCCCCAGGTAAATTTTTCCAGCTCAGAAGTTTTCATGTGTGGGATCTATTTCGAAACCTTTTGTGGTGATAAGATTAGGTCAGCAGGGTGTGGCCATCCATTTTGTATGATTTGTTGGAAGCACTATGTGGATACAAAGATTGACGAGGGTCCTTTTAAGTGCTTGACATTTAGATGCCCCGAACCCTCTTGTGGTGCAGCTATGGACGGAGACATGGTTCACGAACTTGCAAGTGAATCAAGTAAGAAAACGTACGATCAATTTTTGTTCCGGTCTTATGTTGAAAACAATAAGAAGATTAAGTGGTGTCATGCTCCTGCTTGTGGGTATGCTGTATGTTTTGAAGCTGAAGGTTATAGAAAAAATTTCGATGTTACATGTCTTTGTTATCATAGTTTTTGTTGGAGATGTGGGGAAGAATCTCATAGGCCTGTGGATTGTGAAACAACACATCAATGGATAAGAAAGAATAAGACTGAATCTGAAATTGTTGATTGGCTTGTTGCTCACACTAAACCATGTCCTCAGTGCAAGATACCAATTGAGAGAAGCGCAGGGTCCACACACATGATGTGTAATTGTGGATTTCAATTTTGTTGGTTATGTCTCGTTTGTTGGTTATGTCTCGGTGATTGGTTTGCTTTTATACCTTGCAAATGCCATAATAATCAGTTTCAAGAGACTAGCAAGAAGGAAATAGAAAGTAAGATGTCAAAGGGTTATTTTGATAGGTACATTTACTATTATGATCATTGGGCTAAAAATGATGTTTTAAGAAAGAATGTCATTGAAAATTTGATTTACCTTACACCTATAACAACACTGTGTAAGTTTTTTCAAAGGCCTGAAACTGATTTTAATTTTATAATTGAGGCTTGGAAACAAGTGATTGAATGTAGAGGGATACTAAAATGGTGTTATACATATGGATATTATCTCCCTGATAATATAAAGGTCAAGAAGGACTTTTTTGAGTACATCCAGCATAAGGCTGAGGTTACTTTCGAAAAGCTTGATCAATGTGTAGGAATGGAACTGAGAGAGTATCTAAATGATGAGCGAAAAGATGAATTTAATGAATTTTCTTTGAAGCTAGTCAATTTGACTAATGTGACCAAGAACTATTTTGACAAGTTGGTGAAAGCGTTAGAGGATGGGCTTGTTGATGTGCATGTGAACGACGATACGAGTATGAAAAGAAAATCAAGTGAGATAGGCAAGACCTCTTATCGAAGGGGAACCAAGAGAATAGTTACCATTGATGGACTGGCCAAAAATGATCTCTGGCAATGTGAAGCATGTGGCCAATACAATTCTGCCTCTTCTCTTGTGTGTCAGGATATTAATTGCAGACAATACTTTGATTAG 1731 0.379 MDFTLDLNPLSDDKNEIIEDCLPNMEEEEGDTAVYSSYIEEAEKSISTKIIFAEKNFTVLDESNIKRLQEADINQVSYVLSISKFVACLLLRHCEWNVTKVLEAWIDNEERVRNAVGLLKQPQVNFSSSEVFMCGIYFETFCGDKIRSAGCGHPFCMICWKHYVDTKIDEGPFKCLTFRCPEPSCGAAMDGDMVHELASESSKKTYDQFLFRSYVENNKKIKWCHAPACGYAVCFEAEGYRKNFDVTCLCYHSFCWRCGEESHRPVDCETTHQWIRKNKTESEIVDWLVAHTKPCPQCKIPIERSAGSTHMMCNCGFQFCWLCLVCWLCLGDWFAFIPCKCHNNQFQETSKKEIESKMSKGYFDRYIYYYDHWAKNDVLRKNVIENLIYLTPITTLCKFFQRPETDFNFIIEAWKQVIECRGILKWCYTYGYYLPDNIKVKKDFFEYIQHKAEVTFEKLDQCVGMELREYLNDERKDEFNEFSLKLVNLTNVTKNYFDKLVKALEDGLVDVHVNDDTSMKRKSSEIGKTSYRRGTKRIVTIDGLAKNDLWQCEACGQYNSASSLVCQDINCRQYFD. 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02325 576 FunFam RBR-type E3 ubiquitin transferase 128 218 - -
Seca7g02325 576 Pfam IBR domain, a half RING-finger domain 205 268 IPR002867 GO:0008270
Seca7g02325 576 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 64 426 IPR031127 GO:0004842|GO:0016567
Seca7g02325 576 CDD BRcat_RBR_ANKIB1 212 277 - -
Seca7g02325 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 217 IPR013083 -
Seca7g02325 576 Gene3D - 264 511 - -
Seca7g02325 576 ProSiteProfiles TRIAD supradomain profile. 130 353 IPR044066 -
Seca7g02325 576 SMART ibrneu5 272 341 IPR002867 GO:0008270
Seca7g02325 576 SMART ibrneu5 204 268 IPR002867 GO:0008270
Seca7g02325 576 ProSiteProfiles Zinc finger CCHC-type profile. 255 268 IPR001878 GO:0003676|GO:0008270
Seca7g02325 576 SUPERFAMILY RING/U-box 287 331 - -
Seca7g02325 576 SUPERFAMILY RING/U-box 128 216 - -
Seca7g02325 576 SUPERFAMILY RING/U-box 206 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02325 Seca-Chr7 54363034 54374398 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02325 54 567 ARIADNE family AT1G65430 44.828 7.97e-156 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02325 K11968 - gmx:100801350 500.745