Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02324 ATGGACTTCACATTGGACTTGAATCCTCTTAGTGATGACAAAAATGAAATAATTGAAGATTGCCTTCCAAACATGGAGGAGGAGGAGGGCGATACTGCCGTGTATAGTAGCTACATTGAGGCAGCTGAGAAATCTATTTCTACAAAGATCATATTTGCGGAGAAAAACTTCACCGTTTTGGATGAATCTAACATCAAGCGGCTTCAAGAGGCCGATATCAATCAGGTTTCATATGTTCTTTCAATATCAAAATTTGCTGCTTGCCTTTTGCTCCGTCACTGTGAGTGGAACGTGACTAAAGTGCTTGAAGCATGGATTGATAATGAAGAAAGAGTTCGCAACACTATAGGGTTGCTTAAACAGCCCCAGGTAAATTTTTCCAGCTCAAAAATTTTCATGTGTGGGATCTGTTTCGAAACCCTTTGTGGTGATAAGATTAGGTTAGTAGGGTGTCGCCATCCATTTTGTATGATTTGTTGGAAGCGCTATGTGGATACAAAGATTGGCGAGGGTCCTTTTAAGTGCTTGACATTTAGATGCCCCGAACCCTCTTGTGGTGCAGCTGTGGACGGAGACATGGTTCACGAACTTGCAAGTGAATCAAGTAAGAAAACGTACGATCAATTTTTGTTCCAGTCTTATGTTGAAAACAATAAGAAGATTAAGTGGTGTTCTGCTCCTGCTTGTGGGTATGTTGTATGTTTTGAAGCTGAAGGTTATAGAAAAAATTTCGATGTTACATGTCTTTGTTATCATAGTTTTTGTTGGAGATGTGGGGAAGAAGCTCATAGGCCTGTGGATTGTGAAACAGCACATCAATGGATAAGAAAGAATAAGACTGAATCTGAAATTGTTGATTGGCTTGTTGCTCACACTAAACCATGTCCTCAGTGCAAGATACCAATTGAGAGAAGTGCAGGGTCCACACACATGATGTGTAATTGTGGATTTCAATTTTGTTGGTTATGTCTCGGTGATTGGTTTGCTTTTATACCTTGCAAATGCCATAATAATCAGTTTCAAGAGACTAGCAAGAAGGAAATAGAAAGTAAGATGTCAAAGGGTTATTTTGATAGGTACATTTACTATTATGATCATTGGGCTAGAAATGATGTTTTAAGAAAGAATGTCATTGAAAATTTGATTTACCTTACACCTATAACAACACTGTGTAAGTTTTTTCAAAGGCCTGAAACTTATTTTAATTTTATAATTGAGGCTTGGAAACAAGTGATTGAATGTAGAGGGATACTAAAATGGTGTTATACATATGGATATTATCTCCCTGATAATATAAAGGTCAAGAAGGACTTTTTTGTGTACATCCAACATAAGGTTGAGGTTACTTTCGAAAAGCTTGATCAATGTGTAGGAATGGAACTGAGAGAGTATCTAAATGTTGAGCGAAAAGATGAATTTAATGAATTTTCTTTGAAGCTAGTCAATTTGACTAATGTGACTAAGAACTATTTTGATAAGTTGGTGAAAGCGTTAGAGGATGGGCTTGTTGATGTGCATGTGAACGGTGATACGAGCATGAAAAGAAAATCAAGCGAGATAACCAAGACCTCTTATCGAAGGGGAACCAAGAGAATAGTTACCATTGATGGACTGGCCAAAAATGATCTCTGGCAATGTGAAGCATGTGGCCAATACAATTCTGCCTCTTCTCTTGTGTGTCAGGATATTAATTACAGACAATACTTTGATTAG 1713 0.3765 MDFTLDLNPLSDDKNEIIEDCLPNMEEEEGDTAVYSSYIEAAEKSISTKIIFAEKNFTVLDESNIKRLQEADINQVSYVLSISKFAACLLLRHCEWNVTKVLEAWIDNEERVRNTIGLLKQPQVNFSSSKIFMCGICFETLCGDKIRLVGCRHPFCMICWKRYVDTKIGEGPFKCLTFRCPEPSCGAAVDGDMVHELASESSKKTYDQFLFQSYVENNKKIKWCSAPACGYVVCFEAEGYRKNFDVTCLCYHSFCWRCGEEAHRPVDCETAHQWIRKNKTESEIVDWLVAHTKPCPQCKIPIERSAGSTHMMCNCGFQFCWLCLGDWFAFIPCKCHNNQFQETSKKEIESKMSKGYFDRYIYYYDHWARNDVLRKNVIENLIYLTPITTLCKFFQRPETYFNFIIEAWKQVIECRGILKWCYTYGYYLPDNIKVKKDFFVYIQHKVEVTFEKLDQCVGMELREYLNVERKDEFNEFSLKLVNLTNVTKNYFDKLVKALEDGLVDVHVNGDTSMKRKSSEITKTSYRRGTKRIVTIDGLAKNDLWQCEACGQYNSASSLVCQDINYRQYFD. 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02324 570 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 64 420 IPR031127 GO:0004842|GO:0016567
Seca7g02324 570 CDD BRcat_RBR_ANKIB1 212 277 - -
Seca7g02324 570 SUPERFAMILY RING/U-box 128 216 - -
Seca7g02324 570 ProSiteProfiles TRIAD supradomain profile. 130 347 IPR044066 -
Seca7g02324 570 ProSiteProfiles Zinc finger RING-type profile. 134 181 IPR001841 -
Seca7g02324 570 SUPERFAMILY RING/U-box 278 336 - -
Seca7g02324 570 Gene3D - 264 505 - -
Seca7g02324 570 ProSiteProfiles Zinc finger CCHC-type profile. 255 268 IPR001878 GO:0003676|GO:0008270
Seca7g02324 570 SUPERFAMILY RING/U-box 206 275 - -
Seca7g02324 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 218 IPR013083 -
Seca7g02324 570 SMART ibrneu5 204 268 IPR002867 GO:0008270
Seca7g02324 570 SMART ibrneu5 272 335 IPR002867 GO:0008270
Seca7g02324 570 Pfam IBR domain, a half RING-finger domain 285 329 IPR002867 GO:0008270
Seca7g02324 570 Pfam IBR domain, a half RING-finger domain 205 268 IPR002867 GO:0008270
Seca7g02324 570 FunFam RBR-type E3 ubiquitin transferase 128 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02324 Seca-Chr7 54327553 54329265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02324 54 561 ARIADNE family AT1G65430 44.061 5.30e-152 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02324 K11968 - gmx:100801350 512.686