Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02318 ATGGACCGTGAAGAAGACAAACAATCACCCCATAAAACCCCATACACTCAACTTGAACAAGTTAACTCTGATTTTATTCTAGCAATTAGCATGCAAGAGCAAGATGGAACACTCACAGCTCTTGCAACATTTGAAAGTGAAACTGAGGGTGACTCTTCTTTTGATGATAATGATTATGATGGTGATGCAGATTTTTTCCTGAGCCAAGAGTTTGAAAGTGACCTTCAGTTTCATGAGAGTGAAGGAAGCAATGATGAAGATGAAGAAATGGAAGAAGAAGAAGAAGATGATATTGATGTAGATGAATTGACTTATGAAGAGTTGATTGAGTTGGGAGATTTTATTGGAAAGGAGAAAAGAGGATTATCAGCTAGTGAAATTTCTTCATGTTTGCATGCTTACACTAGCAATTCTGCTGAAAACAAAAGTGGTATTGACAGATGTGTAATTTGTCAAGTTGAATATGAACAAGGTGAAGCCTTGGTGGCACTTCAATGTGAGCACCCTTATCATACAGATTGCATAAGCAAGTGGCTTCAAATCAAGAAGGTTTGTCCAATATGTAGCAGTGAAATTTCTGTTCCCAAGATGGTGAATAATTAA 603 0.3698 MDREEDKQSPHKTPYTQLEQVNSDFILAISMQEQDGTLTALATFESETEGDSSFDDNDYDGDADFFLSQEFESDLQFHESEGSNDEDEEMEEEEEDDIDVDELTYEELIELGDFIGKEKRGLSASEISSCLHAYTSNSAENKSGIDRCVICQVEYEQGEALVALQCEHPYHTDCISKWLQIKKVCPICSSEISVPKMVNN. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02318 200 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 34 192 IPR033276 GO:0004842|GO:0016567|GO:0046621
Seca7g02318 200 SMART ring_2 148 188 IPR001841 -
Seca7g02318 200 ProSiteProfiles Zinc finger RING-type profile. 148 189 IPR001841 -
Seca7g02318 200 FunFam E3 ubiquitin ligase BIG BROTHER-related 114 195 - -
Seca7g02318 200 SUPERFAMILY RING/U-box 147 195 - -
Seca7g02318 200 MobiDBLite consensus disorder prediction 75 98 - -
Seca7g02318 200 Pfam Ring finger domain 147 188 IPR001841 -
Seca7g02318 200 MobiDBLite consensus disorder prediction 81 98 - -
Seca7g02318 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 195 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02318 Seca-Chr7 54166252 54166854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02318 95 192 C3H Transcription Factor Family AT3G63530 49.505 2.31e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02318 K19045 - gmx:100777284 278.87