Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02313 ATGATGTCGCTTGAAATTTTCAAATTTGACGATGTTGGTGATTCTTGTTCGGAAATATGTGTAATTTGTCTAGAGGGGTTGAGCACTAGTGGATCTGAGTCAAAAGTTGTTCGCACCAAGTGCTTCCATGTTTTCCATGAAAAGTGCATTTCTCAATGGCTTCTACGCTGTAACAACGATAATCAATCTTGTTCATGCCCATTGTGTCGTTGTCATATTGCTTCTTGA 228 0.3904 MMSLEIFKFDDVGDSCSEICVICLEGLSTSGSESKVVRTKCFHVFHEKCISQWLLRCNNDNQSCSCPLCRCHIAS. 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02313 75 SUPERFAMILY RING/U-box 8 73 - -
Seca7g02313 75 PANTHER SI:CH211-59O9.10 3 74 - -
Seca7g02313 75 SMART ring_2 20 69 IPR001841 -
Seca7g02313 75 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 75 IPR013083 -
Seca7g02313 75 ProSiteProfiles Zinc finger RING-type profile. 20 70 IPR001841 -
Seca7g02313 75 Pfam Ring finger domain 19 70 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02313 Seca-Chr7 53939593 53939820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02313 17 73 C3H Transcription Factor Family AT4G12190 40.351 4.01e-09 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02313 - K22378 lang:109327943 83.5741