Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02306 ATGGCTGGTAGGGATGGAGCTGCTTCCACATCAGAAAAGACATTTGATGCAAAGACACTAAGGCGTTTCACTCAAAACAGGGAGGCTGCAGCAAAAAGCCGTCTCACGAAAGAGTTTAGTAACTCAAGTGCTAGAGCTGCAAGTTTGTCTTTTTCACCTTTCATAATCCTTAGACAGTTTTCATTCATGGAATCCTACACTCGCTTCTCTATCCTTCCTCTTGAAGGATTCAGCCCACATTATTTGTCACAAGAAGAAAGTCCTTTATGGCTATTGGACTACTTCTTTGTTAATTTTCATTGTCACAGGCACACAAATCATTCCCCCCGCCAGAGTCATTCAACCGACAATGAAATAGCAGCCCCAATAACTACATTTGATCAATCATACTTGATTCATCGTGAGATCATCTCTGATTTTGACACATTCGGAGTCATAGATCCTGTTTTCTATTTGCGAGAAATCTTCTCCTCTGAACCTGTTGTACCTGTTTCTTCAGAGTTAATGGACTCAATTCTACCGAGTCTTGTTGCACGTGCTAGGGGCATGATTGAACACAACAATGAAGGACGTCACATGTTGGCGATGACTGTGATTGTTTGCAATACCACATGTCCGAGGCACAGTGCAAATGAAGAAGGTATTGATCATGACCTTATGAAATCGCTTGAAATTTTTAAATTTGACCATGATGATGATTCTTGTTTGGACCTTTGCGCAATTTGTCTGGAGGGGTTGGGCATTAGTGGATCTGAGTCAAAAGTTGTTCGCACCAAGTGCTTCCATGTTTTCCATGAAAAGTGCATTTCTCAATGGTTTCGGCGTTGTAACAACAACAATAAATCTTGTTCATGCCCATTGTGTCGTCAAATTGTTTCTTGA 882 0.4116 MAGRDGAASTSEKTFDAKTLRRFTQNREAAAKSRLTKEFSNSSARAASLSFSPFIILRQFSFMESYTRFSILPLEGFSPHYLSQEESPLWLLDYFFVNFHCHRHTNHSPRQSHSTDNEIAAPITTFDQSYLIHREIISDFDTFGVIDPVFYLREIFSSEPVVPVSSELMDSILPSLVARARGMIEHNNEGRHMLAMTVIVCNTTCPRHSANEEGIDHDLMKSLEIFKFDHDDDSCLDLCAICLEGLGISGSESKVVRTKCFHVFHEKCISQWFRRCNNNNKSCSCPLCRQIVS. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02306 293 CDD RING-H2 239 289 - -
Seca7g02306 293 SMART ring_2 239 288 IPR001841 -
Seca7g02306 293 SUPERFAMILY RING/U-box 225 292 - -
Seca7g02306 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 293 IPR013083 -
Seca7g02306 293 Pfam Ring finger domain 238 289 IPR001841 -
Seca7g02306 293 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 39 289 - -
Seca7g02306 293 ProSiteProfiles Zinc finger RING-type profile. 239 289 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02306 Seca-Chr7 53843597 53848284 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02306 239 289 C3H Transcription Factor Family AT4G12190 44.231 3.37e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02306 - K11985 cam:101511314 91.2781