Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02296 ATGAAATCGCTTGAAATTTTCAAATTTGACCAGGATGATGATTCTTGTTCGGAACTATGCACAATTTGTCTGGAGGGGTTGGGCACTAGTGGATCTGAGTTAAAAGTTGTTCCTACCAAGTGCTTTCATGTTTTCCATGAAAAGTGCATTTACCAATGGTTTCTGCGCTGCAACAACGACAATAAATCTTGTTCATGCCCATTGTGTCGTTGTCAAATTGTTTCTTGA 228 0.3904 MKSLEIFKFDQDDDSCSELCTICLEGLGTSGSELKVVPTKCFHVFHEKCIYQWFLRCNNDNKSCSCPLCRCQIVS. 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02296 75 CDD RING-H2 20 70 - -
Seca7g02296 75 SMART ring_2 20 69 IPR001841 -
Seca7g02296 75 SUPERFAMILY RING/U-box 2 73 - -
Seca7g02296 75 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 75 IPR013083 -
Seca7g02296 75 Pfam Ring finger domain 20 70 IPR001841 -
Seca7g02296 75 ProSiteProfiles Zinc finger RING-type profile. 20 70 IPR001841 -
Seca7g02296 75 PANTHER SI:CH211-59O9.10 2 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02296 Seca-Chr7 53790757 53790984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02296 17 73 C3H Transcription Factor Family AT4G12190 36.842 6.22e-08 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02296 - K11985 lang:109327943 80.4925