Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02293 ATGTGTTCGATCTGTTTCGAAACCCTTTGTGGTGATAAGATTAGGTCAGCATGGTGTGGCCATCCATTTTGCATGATTTGTTGGATGCGCTATGTGGATACAAAGATTGTCCAGGGTCCTTATAAGTGCTTGACACTTAGATGCCCCGAACCCTCTTGTGGTGCAACTGTGGATGGAAACATGGTTCATGAACTTGCAAGTGAATCAAGTAAGAAAAGGTACGATCAATTTTTGTTCTGGTTTGAAAACAATAAGAAGATTAAGTGGTGTCCTGCTCCTGCTTGTGGCTATGCTGTAAGTTTTGAAGCTGATGGTTATAGAAAAAATTTCGATGTTACATGTCTTTGTTATCATAGTTTTTGTTGGAAATGTGGGGAAGAAGCTCATAGGCCTGTGGATTGTGAAACAACACATCAATGGATAAGAAAGAATAAGTCTGAATCTGAAATTGTTGACTGGCTTGTTGCTTATACTAAACCATGTCCTCAATGCAAGATACCCATTGAGAGAAGCACAGGGTCCACACGCATGATTTGCAATTGTGGATTTCAATTTTTTTGGGAGGCTTGGAAACAAGTGATTGAATGTAAAGGGATACTGAAATGGTGTTATACATATGGATATTATCTCCCTGATAATATAAAGGTCAAGAAGGACTTTTTTGAGTACATCCAACATAAGGCTGAGGTTACTTTCGAAAAGCTTGATCATTGTGTAGGAATGGAATTGATAGAGTATCTAAATGTTGAGCGAAAATATGACTTTAATGATTTTTGTTTGAAGCTAGTCAATTTGACTAATGTGACCAAGGACTATTTCGACAAGTTGGTGAAAGCGTTAGAGGATGGCCTTGTTGATGTGCATGTGAATAACGAGACGAGTATGAAAAGAAAATCGAGTGAGATAAGCAAGACCTCTTATCGAAGGGGAACCAAGAGAATAATTACCATTGATGGACTAACCAAAAATGATCTCTGGCAATGTGAGGCATGTGGTGATTACAATTCTACCTCTTCTCTCTTGTGTCAGAACACAAATTGCAGACAATACTTTGATTAG 1059 0.3834 MCSICFETLCGDKIRSAWCGHPFCMICWMRYVDTKIVQGPYKCLTLRCPEPSCGATVDGNMVHELASESSKKRYDQFLFWFENNKKIKWCPAPACGYAVSFEADGYRKNFDVTCLCYHSFCWKCGEEAHRPVDCETTHQWIRKNKSESEIVDWLVAYTKPCPQCKIPIERSTGSTRMICNCGFQFFWEAWKQVIECKGILKWCYTYGYYLPDNIKVKKDFFEYIQHKAEVTFEKLDHCVGMELIEYLNVERKYDFNDFCLKLVNLTNVTKDYFDKLVKALEDGLVDVHVNNETSMKRKSSEISKTSYRRGTKRIITIDGLTKNDLWQCEACGDYNSTSSLLCQNTNCRQYFD. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02293 352 SMART ibrneu5 72 134 IPR002867 GO:0008270
Seca7g02293 352 SUPERFAMILY RING/U-box 1 81 - -
Seca7g02293 352 Gene3D - 130 187 - -
Seca7g02293 352 Gene3D - 188 287 - -
Seca7g02293 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Seca7g02293 352 ProSiteProfiles Zinc finger CCHC-type profile. 121 134 IPR001878 GO:0003676|GO:0008270
Seca7g02293 352 CDD BRcat_RBR_ANKIB1 82 143 - -
Seca7g02293 352 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 2 206 IPR031127 GO:0004842|GO:0016567
Seca7g02293 352 ProSiteProfiles Zinc finger RING-type profile. 2 49 IPR001841 -
Seca7g02293 352 SUPERFAMILY RING/U-box 74 141 - -
Seca7g02293 352 Pfam IBR domain, a half RING-finger domain 74 134 IPR002867 GO:0008270
Seca7g02293 352 FunFam RBR-type E3 ubiquitin transferase 1 85 - -
Seca7g02293 352 SUPERFAMILY RING/U-box 145 202 - -
Seca7g02293 352 ProSiteProfiles TRIAD supradomain profile. 1 210 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02293 Seca-Chr7 53656210 53657520 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02293 183 287 C3H Transcription Factor Family AT2G31510 53.774 2.93e-31 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02293 K11968 - gmx:100801350 268.855