Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02291 ATGGAGGAGGAGGGCGATACTGCCGTGTATAGTAGCTACATTAAGGCAGCTGAGAAATTTATTTCTACAAAGACCATATTCGCGGAAAAAAACTTCACTGTTTTGGATGAATCTAACCTCAAGTTGCTTCAAGAGGCCGATATCAATCAGGTTTCGTATGTTCTTTGCATATCAAAATTTTCTGCTTGCCTTTTGCTCCGTCACTATGGGTGGAGCGTGACTAAAGTGCTTGAAGCATGGATTGATAATGAAGAAAGAGTTCGCAATGCTGTTGGGTTGCTTAAACAGTCCCAGGTAAATTTTTCCAACACAGAAATTTTCATGTGTGGGATCTGTTTCGAAACCCTTTGTGGTGATAAGATTAGGTCAGCAGGGTGTGGCCATCTATTTTGCATGATTTGTTGGATGCACTATGTGGATACAAAGATTGTCGAGGGTCCTTATAAGTGCTTGACACTTAGATGCCCCGAACTCTCTTGTGGTGCAGCTGTGGATGGAAACATGGTTCATGAACTTGCAAGTGAATCAAGTAAGAAAAGATACGATCAATTTTTGTTCCGGTCTTACGTTGAAAACAATAAGAAGATTAAGTGGTGTCCTGCTCCTGCTTGTGGGTATGCTGTAAGTTTTGAAGCTGATGGTTATAGAAAAAATTTCGATGTTACTTGTCTTTGTTATCATAGTTTTTGTTGGAAATGTGGGGAAGAAGCTCATAGGCCTGTGGATTGTGAAACAGCACATAAATGGATAAGAAAGAATAAGTCTGAATCTGAAATTGTTGACTGGCTTGTTGCTCATACTAAACCATGTCCTCAATGCAAGATACCCATTGAGAGAAGTGTTGGGTCCACACACATGATTTGCAATTGTGGATTTCAATTTTGTTGGTTATGTCTCGGTGATTGGTTTACTTTTAGACCTTGCAAATGCCATAATAATCAGTTTCAAGAGACTAGCAAGAAGGAAATAGAAAGTAAGATGTCAAGGGGTTATTTTGATAGGTACATTTACTATTATGATCATTGGGCTAGAAATGATGTTTTAAGAAAAAATGTCATTGAAAATTTGATTTACCTTACTCCTAAAAATGTCAAAGGCCTGAAACTGGTTTTAATTTTATAA 1122 0.3806 MEEEGDTAVYSSYIKAAEKFISTKTIFAEKNFTVLDESNLKLLQEADINQVSYVLCISKFSACLLLRHYGWSVTKVLEAWIDNEERVRNAVGLLKQSQVNFSNTEIFMCGICFETLCGDKIRSAGCGHLFCMICWMHYVDTKIVEGPYKCLTLRCPELSCGAAVDGNMVHELASESSKKRYDQFLFRSYVENNKKIKWCPAPACGYAVSFEADGYRKNFDVTCLCYHSFCWKCGEEAHRPVDCETAHKWIRKNKSESEIVDWLVAHTKPCPQCKIPIERSVGSTHMICNCGFQFCWLCLGDWFTFRPCKCHNNQFQETSKKEIESKMSRGYFDRYIYYYDHWARNDVLRKNVIENLIYLTPKNVKGLKLVLIL. 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02291 373 CDD BRcat_RBR_ANKIB1 187 252 - -
Seca7g02291 373 FunFam RBR-type E3 ubiquitin transferase 103 193 - -
Seca7g02291 373 ProSiteProfiles Zinc finger CCHC-type profile. 230 243 IPR001878 GO:0003676|GO:0008270
Seca7g02291 373 ProSiteProfiles Zinc finger RING-type profile. 109 156 IPR001841 -
Seca7g02291 373 SMART ibrneu5 247 310 IPR002867 GO:0008270
Seca7g02291 373 SMART ibrneu5 179 243 IPR002867 GO:0008270
Seca7g02291 373 SUPERFAMILY RING/U-box 180 250 - -
Seca7g02291 373 Pfam IBR domain, a half RING-finger domain 260 302 IPR002867 GO:0008270
Seca7g02291 373 Pfam IBR domain, a half RING-finger domain 179 243 IPR002867 GO:0008270
Seca7g02291 373 Gene3D - 239 358 - -
Seca7g02291 373 ProSiteProfiles TRIAD supradomain profile. 105 322 IPR044066 -
Seca7g02291 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 194 IPR013083 -
Seca7g02291 373 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 44 343 IPR031127 GO:0004842|GO:0016567
Seca7g02291 373 SUPERFAMILY RING/U-box 262 315 - -
Seca7g02291 373 SUPERFAMILY RING/U-box 103 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02291 Seca-Chr7 53544445 53545566 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02291 29 370 ARIADNE family AT1G65430 45.042 6.23e-109 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02291 K11968 - gmx:100801350 409.453