Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02283 ATGATTACATTAGCAAGAGCGGGAGCAGCTACATCCGATAAAGCCTTACCCGGTTGCATAGACACATGCGGAAACGTTTCAATTCCATATCCATTTGGCGTAGGCAAGTCTTCCAAAACAGGTCAAAACTGTTTCTTGGAAGAAAGATTGAACCTTACCTGCAGTAATAACAGGACTTTATATTACGGGATTAATGTCCAAGTTTTAAACATAGACCTCCTCGAAGGCCAATTGGACGATGGAGAAGCTAATCAGCTTTATCTTCGCACTCTTGCTTTTACCATCTCTAGCAAAGAAAACCAATTCATTACTAGTGTTGGTTGCAACACCTACGGCTATCTCAATAGCTATCACGACGGGGAAGAGTATTCAACGGGGTGTTTAACAAGATGTAGTAAGTTACCTGATATGGTAACCGGTGGAGAGTGTTTACGTGGCTCTTATAATTTTTCTATTAGTCATTTAGAGAGTCTGCCTTTTAGTAAACTCCCTATGGTTGTTGATTGGAGTGTTGGAAGTAATAATAATGGACAGAAAAGTGTATGCATGAATAATAGCTATTGTGATGATGGTGAGACTAGTTATGGATACCGGTGTAGATGTGAATCTGGTTATGATGGAAACCCATACCATCCCAATGGTTGCCAAGACATTGACGAATGTAAGACAAAAAATCATACATGCATGAGTGATCTTCATTGTCGCAACACCGATGGGTCTTATGAATGTTTTTGTCCTCATGGGCAAGTTGGAAATGGAACAAACATAGGAACATGCCAACCAGTCCGGCGAGAAAATACTAACACCGTGTTAGCCATTGGTGGATGTGCTGGACTTATAGCTCTGTTGGGTGCTTCCTGGTTATACTTAATCTATCAAAAAAGGAAACTCATAAAACAAAGAGAGATATTCTTCCAACAAAATGGTGGCTTCATTTTACAACGAAGACTATCATCAAGTAGGGATTCCCCTCAAATTGCTCAAATTTTCACTGCAGAAGAGTTGAAAAAAGCCACCAACAACTACAATGAGAGCTTAATCATCGGCAAAGGAGGTTATGGCACAGTTTTCAAAGGATTCCTAGCAGACAATAGGGTTGTCGCTATCAAGAAGTCCAAAGTTGTGGATCAAAACCAAGCTGAGCAATTCATCAACGAGGTGATTATTTTGTCCCAAATCAATCATAGAAATGTGGTGAAACTCTTAGGTTGTTGTTTAGACACCGAAGTCCCATTATTGGTTTATGAATTTGTTAACAATGGAACCCTTTATGATCATTTACACAATGAAAGCAAAACAAGTAGTAGTAATCTATCTTGGAAGAGTCGTCTAAGAATAGCCATAGAAGCAGCTGGAGCATTATCATATTTGCACTCAGATGCTTCAATAACCATTATCCATAGAGATGTCAAGAGTGCCAACATTCTATTGGATGACACTTTCACTGCCAAAGTTTCTGATTTTGGAGCTTCAAGATTGGTTCCACTTGACCAAAATGAATTAGCCACAATGGTACAAGGGACTTTTGGTTACTTGGATCCAGAATACATGCAAACAAGTAGACTCACTGAGAAGAGTGATGTTTATAGCTTTGGAGTAGTGCTTTTGGAGCTATTATCTGGGAGAAAGGCTCTTTCATTTCAGAGGCCAGAAGAAGAAAGAAGTCTTTCATTGCACTTTCTCTCTTGCTTGGAAGATGAACGTTTGTTTGAAATTCTTGAATTTGGTCTTTTGAATGAGGGAAATAAGGAGGAGATTATAGGAGTTGCTATTCTTGCAAGTAAGTGCTTGAGGCTTAATGGGGAGGAGAGACCTAGCATGAAGGAAGTGGAAATGGAGTTGAAGGGTATGAGGCAAATAGAGAAGCACCCTTGGACAAATACAGAACTAGATTTGGAGGAGTCTCAATACTTGCTTCATGAGGTTCCCGGTATTTATAAGCATGGCGAGAGAGGTGACCATGGAAATGCTGAGTACGACAGCTTGAGGGACCATTTAATGATTTCCTTTGATGTTGCACGTTAA 2025 0.3985 MITLARAGAATSDKALPGCIDTCGNVSIPYPFGVGKSSKTGQNCFLEERLNLTCSNNRTLYYGINVQVLNIDLLEGQLDDGEANQLYLRTLAFTISSKENQFITSVGCNTYGYLNSYHDGEEYSTGCLTRCSKLPDMVTGGECLRGSYNFSISHLESLPFSKLPMVVDWSVGSNNNGQKSVCMNNSYCDDGETSYGYRCRCESGYDGNPYHPNGCQDIDECKTKNHTCMSDLHCRNTDGSYECFCPHGQVGNGTNIGTCQPVRRENTNTVLAIGGCAGLIALLGASWLYLIYQKRKLIKQREIFFQQNGGFILQRRLSSSRDSPQIAQIFTAEELKKATNNYNESLIIGKGGYGTVFKGFLADNRVVAIKKSKVVDQNQAEQFINEVIILSQINHRNVVKLLGCCLDTEVPLLVYEFVNNGTLYDHLHNESKTSSSNLSWKSRLRIAIEAAGALSYLHSDASITIIHRDVKSANILLDDTFTAKVSDFGASRLVPLDQNELATMVQGTFGYLDPEYMQTSRLTEKSDVYSFGVVLLELLSGRKALSFQRPEEERSLSLHFLSCLEDERLFEILEFGLLNEGNKEEIIGVAILASKCLRLNGEERPSMKEVEMELKGMRQIEKHPWTNTELDLEESQYLLHEVPGIYKHGERGDHGNAEYDSLRDHLMISFDVAR. 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02283 674 SMART egf_5 220 260 IPR000742 -
Seca7g02283 674 SMART egf_5 142 216 IPR000742 -
Seca7g02283 674 ProSitePatterns Calcium-binding EGF-like domain signature. 217 243 IPR018097 GO:0005509
Seca7g02283 674 Gene3D Transferase(Phosphotransferase) domain 1 418 637 - -
Seca7g02283 674 Pfam Wall-associated receptor kinase galacturonan-binding 19 74 IPR025287 GO:0030247
Seca7g02283 674 SMART serkin_6 342 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02283 674 ProSiteProfiles EGF-like domain profile. 173 216 IPR000742 -
Seca7g02283 674 FunFam Fibrillin 2 212 257 - -
Seca7g02283 674 ProSiteProfiles EGF-like domain profile. 217 260 IPR000742 -
Seca7g02283 674 CDD EGF_CA 217 251 - -
Seca7g02283 674 FunFam Wall-associated receptor kinase 2 312 417 - -
Seca7g02283 674 Gene3D Laminin 173 259 - -
Seca7g02283 674 ProSiteProfiles Protein kinase domain profile. 342 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02283 674 SMART egfca_6 217 260 IPR001881 GO:0005509
Seca7g02283 674 SUPERFAMILY EGF/Laminin 216 255 - -
Seca7g02283 674 FunFam Wall-associated receptor kinase 2 418 637 - -
Seca7g02283 674 Pfam Protein kinase domain 343 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02283 674 SUPERFAMILY Protein kinase-like (PK-like) 321 613 IPR011009 -
Seca7g02283 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Seca7g02283 674 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 11 621 IPR045274 GO:0007166
Seca7g02283 674 Gene3D Phosphorylase Kinase; domain 1 316 417 - -
Seca7g02283 674 ProSitePatterns Protein kinases ATP-binding region signature. 348 371 IPR017441 GO:0005524
Seca7g02283 674 Pfam Calcium-binding EGF domain 217 259 IPR001881 GO:0005509
Seca7g02283 674 CDD STKc_IRAK 348 617 - -
Seca7g02283 674 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 234 245 IPR000152 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02283 Seca-Chr7 53282079 53285989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02283 14 674 Receptor kinase-like Gene Family AT1G21230 43.750 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca7g02283 Pkinase 8.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02283 - - gmx:100819535 816.224