Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02274 ATGAGGCAATTGGCTTGTAATAGGCAAGGAGAGAGATGTGAGAAGCATTTAAATAGAACTGATAGAGTAAGGGAGGCTAAGCTAATAACTCGTACCAAATGTAATGCAAGGATTTGTGTTCACTTAAACTATAAGACTACGAAATGGAGGGTTAGCATGTTTGAACCAGCTCATAATCATGAGTTGACTCCTGCAAATATGGTTCATTTGTTTCCCGCATATCGCAGCTTGAGTTTTGTAGATAAGGCACAAGTAAATGGTCTTCACTCACATGGTGTGAGGACTTGCCATATTATGGGGCTAATAATGGGTCAAAAGGGTGGTTATTCTGATTTGGGGTTTTGTAAGAAAGATTTGTATAATCACATTGATAAGGAGAAAAGGGCACAATTAAAGGATAGTGATGCATTTGCTGCATTGTCCTATCTCCAAGCAAAGTCTGATAACAATCCTATGACCTTTATAAAATTTACAACGACCAAAGATGATAGACTTAAGAATCTATTTTGGTCTAATGTTAGTAGTAGAATAGATTACATATGTTTTGGTGATGTTCTTGCTTTTGACACAACATATAAGAAAAATAAATATAACAGACCACCAGTAATTTTATGTGGTTATAATCATCATGGTGAAACAACTATTTTTGGATGTGCTCTTGTTGCTGATGAGAAGACTAAAACGTATAAGTGGGTCCTGGAAACATTTTTGGAAGCTATGTTCAATAAAATTCCAAAAGCTGTTGTTGTTGATGGTGATGGTGTAATGCATGAAGCAATCAAGACTGTTTTTCCTGGGGCAGTTCATAGGTTATGTGCATGGCATCTTTACCAAAATGCTTGTGAGAATGTCAAGAATTCTAAATTTCTTGAAGAATTTAAGAACCTTATATATGGAAATTTTAGTAGGCAGAAGTTTGAGGATTTGTGGAACAATGTCATTGAGAAACATGGACTTGGCAATAATAAATGGGTTAGAAAGGTTTATGATTTGAAGAAGATGTGGGCAACTGCATATCTTAGGGAAAAAAATTTTGCTGGTATAAAAATTACTTCAATTTGTGAAGGTATAAACTCTTTCATTAAGAGGTATGTACAACACAAAAATAGCCTTGTTGATTTCATGCACAATTTTGAGAGAGCTATCAATGAGTATAGGCACAGTGAATTAGCTTCTGATTTTAAGTCTATGTACACTGAACCTGTCTTGACTACTGCATTAGAAAGCTTGATAAGTGAACTAAAAAGTACTCTAATTTATCAACTAATTTTCACTTATCAGAAGGAAATTGAGAAAGTTGTTGCTTTGAATGTTATTGAGAGGTCTGAGGTTGGTAATTCAGTTAGGTTGAAGCTAAACAAATTTGGAAGTTCTGATTCTGTGTATGTTGTTCTTTTTGACATGTCTACTGGTAATTTTGTTTGTGATTGTCATTTTTTTGAATCATGTGGCCTTCCATGCTCTCACATTTTTTGTGCTATGAAGAATGAGCAAGTTGATTCCTTACCTTCAACTTTAGTTTGCAAGAGATGGACAAAGCTTTCAAAGCTTGATCACATTTCTGTTGTTTATGTTGAAGAAGGAAACTCTAAAAAAAGGAATTGTTAA 1608 0.3439 MRQLACNRQGERCEKHLNRTDRVREAKLITRTKCNARICVHLNYKTTKWRVSMFEPAHNHELTPANMVHLFPAYRSLSFVDKAQVNGLHSHGVRTCHIMGLIMGQKGGYSDLGFCKKDLYNHIDKEKRAQLKDSDAFAALSYLQAKSDNNPMTFIKFTTTKDDRLKNLFWSNVSSRIDYICFGDVLAFDTTYKKNKYNRPPVILCGYNHHGETTIFGCALVADEKTKTYKWVLETFLEAMFNKIPKAVVVDGDGVMHEAIKTVFPGAVHRLCAWHLYQNACENVKNSKFLEEFKNLIYGNFSRQKFEDLWNNVIEKHGLGNNKWVRKVYDLKKMWATAYLREKNFAGIKITSICEGINSFIKRYVQHKNSLVDFMHNFERAINEYRHSELASDFKSMYTEPVLTTALESLISELKSTLIYQLIFTYQKEIEKVVALNVIERSEVGNSVRLKLNKFGSSDSVYVVLFDMSTGNFVCDCHFFESCGLPCSHIFCAMKNEQVDSLPSTLVCKRWTKLSKLDHISVVYVEEGNSKKRNC. 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02274 535 SMART 26again6 473 500 IPR006564 GO:0008270
Seca7g02274 535 Pfam FAR1 DNA-binding domain 2 63 IPR004330 -
Seca7g02274 535 Pfam MULE transposase domain 185 279 IPR018289 -
Seca7g02274 535 ProSiteProfiles Zinc finger SWIM-type profile. 462 498 IPR007527 GO:0008270
Seca7g02274 535 PANTHER OS01G0519700 PROTEIN 2 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02274 Seca-Chr7 53199602 53211748 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca7g02274 MULE 1.7e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02274 - - ccaj:109792835 615.15