Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02263 ATGACCACCCAACAACTTGCCCTGCTGGTGTTAATGATTGCAATATTAGTAACGGTGGGAGGAGCAGCAGCACTTGATGATAACAACGCCCTAACTGGTTGCATAGACACATGCGGAAACGTTTCAATTCCATATCCATTTGGCGTAGGCAAATCTTCTAAAACAGGTGAGAACTGTTTCTTGGAAGAAAGATTGAACCTTACCTGCGACAATAACTCTTTGTATCAAGGCAACACTCAAGTCCTAAACATAGACCTCCTCAAAGGCCAATATGAAATATCTTTTTTTGTTTCAAAGCTTTGCAATGATACAACAAGAGCCAATCAGCCCTCTCTTGAAACTCCTGCTTTTACCATCTCTAGCAAAGAAAACCAGTTCATAAGTGTTGGATGCAACACCTACGGCTATCTCAATAGCTATCACGACGGGGAAGAGTATTCGACGGGGTGTATAACGAGATGTAGCAGGTTACCTGATACGGTGAAAGATGGAGAGTGTTCGGGGATAGGGTGTTGTGAGGTGGATATTCCTTCTCAAATGAAGAATATCACTATACAGACATATAGCTTTAACTCTATGAATTTCAGTGGCTGTAGCTATTCCTTTGTTGCCAAACGAGGCTCATATAACTTTTCTGTTAGTCATTTGGACAAGCTGCCCTTTCATGAGATTCCTATGGTTGTTGATTGGACTGTTGGAAAGGAAAATGAAACATGTGGATTTTTCAAGGAAGGACACAAAAGTGCCTGCATGAATAATAGCTATTGTGACGATGATGACACGAGTTATGGATACCGGTGCAGATGTAAAACTGGTTTTGATGGAAATCCATATCATCCGAATGGTTGCCAAGACATTGACGAATGCAAGACAAAAAATCATACATGCATTAGTGATCTTCATTGTCGCAACATTGATGGGTCTTACGAATGTTTTTGTCCTCCTGGGCAAGTTGGAAATGGAAGAAATACAGGAGGAGGATGCCAACCAATCCGGCACGAAAGTATACTTACCAAGGTAGCCATTGGTGCATGTGCTGGACTTATAGCTCTATTGGGTGCTTCCTGGTTATACTTAATCTATCAAAAAAGGAAACTCACAAAACAAAGAAAAAAATTCTTTCAACAAAATGGTGGTTTCATTTTGCAACGAAGACTCTTTTCAAGAGAAGACTCCCACCAAATTGCTCAAATTTTCACAGCAGAAGAGCTGAAAAAGTCTACCAACAACTACAACGAGAGCTTAATCATTGGTAAAGGAGGTTTTGGAACAGTTTTTAAAGGATTTCTTGCTAATAATAGGATTGTTGCTGTGAAGAAGTCCAAAGTAGTGGATCAAAACCAAGCTGAGCAATTCATCAACGAAGTGATTATTCTATCCCAAATCAATCACAGGAATGTGGTGAAACTCTTGGGTTGTTGTTTAGACACTGAAGTCCCATTATTGGTTTATGAATTTGTTAACAATGGTACCCTTTATGATCATTTACACAATGAAAGCAAGGTAGGTAATCTCACTTGGAAGACTCGTCTAAGAATAGCTATAGAGACAGCTGGAGCATTATCATATTTGCATTCAGATGCTTCAATAACCATTATCCATAGGGATGTGAAGAGTGCAACATTCTTTTGGATGACAATTACACTGCCAAGGTGTCTGATTTTGGAGCTTCAAAGTTAG 1680 0.3964 MTTQQLALLVLMIAILVTVGGAAALDDNNALTGCIDTCGNVSIPYPFGVGKSSKTGENCFLEERLNLTCDNNSLYQGNTQVLNIDLLKGQYEISFFVSKLCNDTTRANQPSLETPAFTISSKENQFISVGCNTYGYLNSYHDGEEYSTGCITRCSRLPDTVKDGECSGIGCCEVDIPSQMKNITIQTYSFNSMNFSGCSYSFVAKRGSYNFSVSHLDKLPFHEIPMVVDWTVGKENETCGFFKEGHKSACMNNSYCDDDDTSYGYRCRCKTGFDGNPYHPNGCQDIDECKTKNHTCISDLHCRNIDGSYECFCPPGQVGNGRNTGGGCQPIRHESILTKVAIGACAGLIALLGASWLYLIYQKRKLTKQRKKFFQQNGGFILQRRLFSREDSHQIAQIFTAEELKKSTNNYNESLIIGKGGFGTVFKGFLANNRIVAVKKSKVVDQNQAEQFINEVIILSQINHRNVVKLLGCCLDTEVPLLVYEFVNNGTLYDHLHNESKVGNLTWKTRLRIAIETAGALSYLHSDASITIIHRDVKSATFFWMTITLPRCLILELQS. 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02263 559 SMART egfca_6 285 329 IPR001881 GO:0005509
Seca7g02263 559 ProSiteProfiles Protein kinase domain profile. 411 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02263 559 Gene3D Transferase(Phosphotransferase) domain 1 487 546 - -
Seca7g02263 559 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 541 IPR045274 GO:0007166
Seca7g02263 559 FunFam Wall-associated receptor kinase 2 381 486 - -
Seca7g02263 559 Gene3D Phosphorylase Kinase; domain 1 385 486 - -
Seca7g02263 559 ProSiteProfiles EGF-like domain profile. 285 323 IPR000742 -
Seca7g02263 559 FunFam Fibrillin 2 280 324 - -
Seca7g02263 559 SMART egf_5 238 284 IPR000742 -
Seca7g02263 559 SMART egf_5 288 329 IPR000742 -
Seca7g02263 559 SUPERFAMILY Protein kinase-like (PK-like) 393 540 IPR011009 -
Seca7g02263 559 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 302 313 IPR000152 -
Seca7g02263 559 SUPERFAMILY EGF/Laminin 279 321 - -
Seca7g02263 559 Gene3D Laminin 238 326 - -
Seca7g02263 559 Pfam Protein tyrosine and serine/threonine kinase 416 538 IPR001245 GO:0004672|GO:0006468
Seca7g02263 559 CDD EGF_CA 285 319 - -
Seca7g02263 559 ProSitePatterns Protein kinases ATP-binding region signature. 417 440 IPR017441 GO:0005524
Seca7g02263 559 Pfam Wall-associated receptor kinase galacturonan-binding 34 88 IPR025287 GO:0030247
Seca7g02263 559 Pfam Calcium-binding EGF domain 285 318 IPR001881 GO:0005509
Seca7g02263 559 ProSitePatterns Calcium-binding EGF-like domain signature. 285 311 IPR018097 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02263 Seca-Chr7 52884255 52893327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02263 1 543 Receptor kinase-like Gene Family AT1G21230 42.068 5.65e-124 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca7g02263 Pkinase 4.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02263 - - gmx:100779983 630.943