Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02259 ATGCCAATAAGGTATTCATTCAAAGAGATAAAGAGGATGACTAAAAATTTCAAGTACAAGTTGGGTGAAGGAGGCTATGGCTCTGTTTATAAAGGAAAGCTACGAAGTGGACCTTTTGTAGCCATAAAAATGTTAAGTAAACCTAAGGCTAAAGGGCAAGAATTTATTAGTGAAGTTGCAACCATAGGTAGAATACACCATGCCAATGTGGTGAGACTTATTGGATATTGTGTTGAGGCATCAAAACGTGCTCTTGTTTATGAATTCATGCCCAATGGTTCACTTGATAAATATATTTCCTCCAAAGAGGGTGCTCTGTCTCTAACTTATAAACAAATGTATGAGATATCTCTTGGAGTTGCTCGTGGTATTGCTTATTTGCATCAAGGGTGTGATATGCAAATTTTGCATTTTGATATCAAGCCCCATAACATCCTTCTTGATGAGAATTTTATTCCTAAGGTTTCAGACTTTGGTCTTGCAAAGCTTTATCCTATTGATAATAGCATTGTAACTTTGACTGCTGCAAGAGGAACAATTGGTTACATGGCTCCTGAATTGTTCTACAAAAATATTGGAGGAGTATCCTATAAGGCTGATGTGTATAGCTTTGGAATGCTTTTGATGGAAATTGCAAATAAGAGAAGAAATGTAAATCCACATGCAGATCATTCGAGCCAGATTTTCTTTCCCATATGGATTTACAATCATTTTATTGAAGAAAGGGAGATTGAAATAAGGGAAGAAGTTTCCAATGAGGAAAAGAATAATGTGAAGAAGATGTTCATAGTTGCATTGTGGTGTATACAGTTAAAACCCAGTGATCGTCCTTCAATGAACAGAGTAATAGAGATGCTTGAAGGAGATATTGAGAGCATTGAAATGCCTCCAAAGCCCTCTTTGTATCCAAATGAAATGATTGAAGGAGATCTCGAATTCAGCTCTAATGAAATCACATCAGATGATGCTACTGACTCTCTTAGTTTCCTTGAGGAAACTCAAACAGATCCTTTATTAAAGTATTCTGCATGA 1032 0.3614 MPIRYSFKEIKRMTKNFKYKLGEGGYGSVYKGKLRSGPFVAIKMLSKPKAKGQEFISEVATIGRIHHANVVRLIGYCVEASKRALVYEFMPNGSLDKYISSKEGALSLTYKQMYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDNSIVTLTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEIANKRRNVNPHADHSSQIFFPIWIYNHFIEEREIEIREEVSNEEKNNVKKMFIVALWCIQLKPSDRPSMNRVIEMLEGDIESIEMPPKPSLYPNEMIEGDLEFSSNEITSDDATDSLSFLEETQTDPLLKYSA. 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02259 343 ProSiteProfiles Protein kinase domain profile. 15 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02259 343 Pfam Protein kinase domain 18 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02259 343 SMART serkin_6 15 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02259 343 FunFam serine/threonine-protein kinase PBS1-like 1 89 - -
Seca7g02259 343 ProSitePatterns Protein kinases ATP-binding region signature. 21 43 IPR017441 GO:0005524
Seca7g02259 343 FunFam PR5-like receptor kinase 90 298 - -
Seca7g02259 343 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Seca7g02259 343 PANTHER RUST RESISTANCE KINASE LR10-RELATED 4 306 IPR045874 GO:0004672
Seca7g02259 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Seca7g02259 343 SUPERFAMILY Protein kinase-like (PK-like) 4 287 IPR011009 -
Seca7g02259 343 Gene3D Transferase(Phosphotransferase) domain 1 90 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02259 Seca-Chr7 52869280 52870311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02259 4 319 Receptor kinase-like Gene Family AT5G38280 48.447 5.48e-107 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca7g02259 Pkinase 2.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02259 - - mtr:25482268 528.48