Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02242 ATGTGTGATTGCTTCTATATTGATTTTCAATGTCACACACACACAAATCATTCCCCACGCGAGACTCATTCAACCCACAATGAAACAGCAGCCACAATAACTACATTTTCTGAGTCCTACTTGATTCCTTGTGACATTATATGTGATTTTGACACATTCGGAATCATAGATCCTGAATGTTTGTCTATTGCTTTTTTGCGTGAAACCTTCTCATCAGTCCCTGTTTATTCAGAGTCTATGGACTCAATTCTACTGAGTCTTGTTGAACGTGCTAGGGGAATGTTTGAAACCAACAACGAAGGACATCACATATTGGAGATGTCTGTGAATGTTTACATCAACACATGGCCAAGGAATAGTGCAGATGAAGAAGGTATTGATCACTCTATAGATGACCTTATCAAGTCGCTTGAAAATTTTAAATTTGAAAATGATGATGATTCTTGTTCAAAACTATGCCCAATTTGTTTGGAGGGGATGGACACCACCAGTGGATCTCAATCAAAAGTTGTTCGCACTAAATGCTTTCATGTTTTTCATGAAAAGTGCATTTCTCAATGGTTTATGCGTTGTAACAACCAGGATCAATCATGTTCATGTCCATTGTGTCGTTGTCAAATTGCTTCTTGA 630 0.3778 MCDCFYIDFQCHTHTNHSPRETHSTHNETAATITTFSESYLIPCDIICDFDTFGIIDPECLSIAFLRETFSSVPVYSESMDSILLSLVERARGMFETNNEGHHILEMSVNVYINTWPRNSADEEGIDHSIDDLIKSLENFKFENDDDSCSKLCPICLEGMDTTSGSQSKVVRTKCFHVFHEKCISQWFMRCNNQDQSCSCPLCRCQIAS. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02242 209 ProSiteProfiles Zinc finger RING-type profile. 153 204 IPR001841 -
Seca7g02242 209 Pfam Ring finger domain 153 204 IPR001841 -
Seca7g02242 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 208 IPR013083 -
Seca7g02242 209 SUPERFAMILY RING/U-box 133 207 - -
Seca7g02242 209 CDD RING-H2 153 204 - -
Seca7g02242 209 SMART ring_2 153 203 IPR001841 -
Seca7g02242 209 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 60 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02242 Seca-Chr7 52670847 52671476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02242 137 207 C3H Transcription Factor Family AT4G12190 34.722 2.07e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02242 - K22378 mtr:112418131 122.094