LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca7g02241	ATGGTGTCTTGCAAACCTTTTAGACCTTGCTTCTTGGATGTGATGATATTGCAACAGGCACCACAATTTTACAGTGAAGAGGAAATGGATAAAGTCAAGAATATATGCAAATTGCATCTACAAGAAGAAAATGATGAGCAAAAAAATAATGATAAAAGTTTGATGAAAAAAAGGCACATTCAAATTGAAGACTTGCTTGAAGAGGAGGAAAGAGTCACAGCGGTTAAAAAAAGATCAAGAAAGATTATTATTAAGTCAAAGAAACCCCCACCATTATCACCACCGCCGCCAACACAACCATTGTTACCTGCACCTTCATCAGATTTGCCTACAATGTTCAGAAGTTGGATTGAAGAGTTGAACGGTTCTGATGTCAATTTTCTCATGCACAAGAAACTTCACTACAGCGCTGTGAGCACAAATAACAATCGTTTGTCCATGCAACAAAATCAACTTAAGTTTGATTTCCTCACCGAAGTTGAGAAAGCAATGTTGGATGAAAAAGAAGGCATTGAAGTGATTGTCTTAGACCCATGTCTTAGACAATTTTCTTTAATCTTGAAGAGGTGGAAGATGAAAAATGTGAACATCTATAATCTAATAAGGAGTTGGAACAAAGTTGTGCATGAAAATAAATTCAAGAAAAACCATGAACTCCAAATATGGTCTTGTAGGGTCAATAGCAAATTATACTTTCTGTTATATAAACATTAA	714	0.3515	MVSCKPFRPCFLDVMILQQAPQFYSEEEMDKVKNICKLHLQEENDEQKNNDKSLMKKRHIQIEDLLEEEERVTAVKKRSRKIIIKSKKPPPLSPPPPTQPLLPAPSSDLPTMFRSWIEELNGSDVNFLMHKKLHYSAVSTNNNRLSMQQNQLKFDFLTEVEKAMLDEKEGIEVIVLDPCLRQFSLILKRWKMKNVNIYNLIRSWNKVVHENKFKKNHELQIWSCRVNSKLYFLLYKH.	238

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca7g02241	237	MobiDBLite	consensus disorder prediction	88	104	-	-
	Seca7g02241	237	SUPERFAMILY	DNA-binding pseudobarrel domain	126	233	IPR015300	-
	Seca7g02241	237	Gene3D	-	118	236	IPR015300	-
	Seca7g02241	237	PANTHER	B3 DOMAIN PLANT PROTEIN-RELATED	16	236	IPR005508	GO:0003677
	Seca7g02241	237	MobiDBLite	consensus disorder prediction	83	105	-	-
	Seca7g02241	237	Pfam	B3 domain-containing protein At2g31720-like	114	209	IPR005508	GO:0003677

Showing 1 to 6 of 6 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca7g02241	Seca-Chr7	52583808	52592923	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca7g02241	113	234	B3 DNA Binding Superfamily	AT1G05930	30.000	1.29e-11	61.2

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca7g02241	-		-	gmx:102663171	189.504

Showing 1 to 1 of 1 entries