Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02229 ATGTGTGATTGCTTCTATATTGATTTTCAATGTCACACACACACAAATCATTCCCCACGCGAGACTCATTCAACCCACAATGAAACAACAGCCACAATAACTACATTTTCTGAGTCCTACTTGATTCCTTGTGACATCATATGTGATTTTGACACATTCGGAATCATAGATCCTGAATGTTTGCCTATTGCCTTTTTGCGTGAAACCTTCTCATCTGTCCCTGTTTCTTCAGAGTCTATGGACTCAATTCTACTGAGTCTTGTTGAACGTGCTAGGAGAATGTTTGAAACCAACAAAGAAGGACGTCACATGTTGGAGATGTCTGTGATTGTTTGCATTAACACATGGCCGAGGAATAGTGCAGATGAAGATGAAGAAGGTATTGATCACTCTATAGATGAACTTATCAAGTCGCTTGAAATTTTTAAATTCAACGATGATGATGATTCTTGTTCAAAATTATGCCCAATTTGTTTGGAGAGGTTGGACACTACCACTGGATCCCAATCAAAAGTTGTTCGCACTAAGTGTTTTCATGTTTTTCATGAAGAGTGCATTTCTCAATGGTTTCTGAGCTGTAACAACCGGGATCAATCATGTTCATGCCCATTGTGTCATTCTCAAATTTCTTCTTGA 636 0.3852 MCDCFYIDFQCHTHTNHSPRETHSTHNETTATITTFSESYLIPCDIICDFDTFGIIDPECLPIAFLRETFSSVPVSSESMDSILLSLVERARRMFETNKEGRHMLEMSVIVCINTWPRNSADEDEEGIDHSIDELIKSLEIFKFNDDDDSCSKLCPICLERLDTTTGSQSKVVRTKCFHVFHEECISQWFLSCNNRDQSCSCPLCHSQISS. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02229 211 SMART ring_2 155 205 IPR001841 -
Seca7g02229 211 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 57 208 - -
Seca7g02229 211 SUPERFAMILY RING/U-box 135 209 - -
Seca7g02229 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 211 IPR013083 -
Seca7g02229 211 CDD RING-H2 155 206 - -
Seca7g02229 211 Pfam Ring finger domain 155 205 IPR001841 -
Seca7g02229 211 ProSiteProfiles Zinc finger RING-type profile. 155 206 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02229 Seca-Chr7 52180601 52181236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02229 127 209 C3H Transcription Factor Family AT5G05810 34.884 1.28e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02229 - K22378 cam:101511314 98.5969