Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02224 ATGAGCATTTTAAATTTTGAATGTACTGTCTTCATGGAAATAGTTCGACTACAACGAAGCGCCAATTTCCTTGCATGGGGACGCACCTCTGAGATCAAGAAAACTCACGGGCGATCGGAATACCTTCTAGATTACATTGGCGTTCTAACGGCAGTCTCGGAAGAGATTAACTTGACCAAAGAGGAGAGGCAGACAAGAATTATATTGCTGGACATGGCTGATGAAACGGGGGACATTAGGTGTGCAATTTTCGGCAGCATGGTGGACACTGTAATGGGGTACCTCACACTTCCTCGCATTGGGCTTCCTATAGTTATCATTCAGTTCACAAGGATAAACATCTATAAGGGAGAAGTTGGAATCCAGAATCTGATGAATGCTTCCAAGGTTCTATGGAACCCAGAGATACCAGAGGCCATAGAGTTCAAAAATAGCCTAGCTGTGCATGAGGTCGAGACAGATCTTCAGATTGGAACAATATCTGACCGAAGCAGGCCTGCTTCCATTAAGGATGAGTTTCTCAAACTGTACCCTAGGAAGTCTTTGTATGAGCTACTGCAGACAAATGAGGATGGATGCTTCATCATTCTAGGAACTGTTGACGAAGTTATGCAAGAATCTTTGTGGTGGTACATGGCGTGCAAGTGCATGAAGGCGGTTTCCTACGATGACAGGGTACCTTACTGCGAGGATTGTGATCTTTATGTTCCAGACTGTACTCCAAGGTACAAGTTAAAGCTTGCTGTCACCGACGGATCTGATAGCGTTAGTTTGATCCTTTTCGACTCCGAGAGCTACTCATTGTTGGGCAAGTCGTGTCGTGAACTGTTATCGGAGAAGAGGTACACTCGGACATGTCCTTACCCTGCTGCTCTAATGGACTTAGTTGGACATGAGTTCCTATTTCGCGTTGAGGTCAAAGATGATGCTGTGTACTCATTTGATGAGTGCTTCAGAGTGCGACGAGTTTCATCTGAACCCACACTGATTCGAGAGTACACTGAAGGATTAGAGGAGGAAACTCCACTTAAGCTCAAGTTTGCACCGAGTTTTACCAAGAATGTTACGTCTGAAGGGTCAAGCACTGGCATGCATGTGTCTGCTATTCGCAATGCTTCTGTCACTGAAATAGATGTTAGCCCATTATCAAATGATCCCTCGCCATCTGTTGGTGAAGACAGTGGGAGTGCATCGAAGAGGGAACCTGGGCATGCAACGGAATGTGCCACTGAGAAGAAGAAACGGGGCAGGGGGAAGTCCATCAAACTGGAAAGAACTTGA 1281 0.4567 MSILNFECTVFMEIVRLQRSANFLAWGRTSEIKKTHGRSEYLLDYIGVLTAVSEEINLTKEERQTRIILLDMADETGDIRCAIFGSMVDTVMGYLTLPRIGLPIVIIQFTRINIYKGEVGIQNLMNASKVLWNPEIPEAIEFKNSLAVHEVETDLQIGTISDRSRPASIKDEFLKLYPRKSLYELLQTNEDGCFIILGTVDEVMQESLWWYMACKCMKAVSYDDRVPYCEDCDLYVPDCTPRYKLKLAVTDGSDSVSLILFDSESYSLLGKSCRELLSEKRYTRTCPYPAALMDLVGHEFLFRVEVKDDAVYSFDECFRVRRVSSEPTLIREYTEGLEEETPLKLKFAPSFTKNVTSEGSSTGMHVSAIRNASVTEIDVSPLSNDPSPSVGEDSGSASKREPGHATECATEKKKRGRGKSIKLERT. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02224 426 CDD RPA1_DBD_C 194 309 IPR047192 -
Seca7g02224 426 SUPERFAMILY Nucleic acid-binding proteins 177 311 IPR012340 -
Seca7g02224 426 Pfam Replication factor-A C terminal domain 194 310 IPR013955 -
Seca7g02224 426 Gene3D - 170 338 IPR012340 -
Seca7g02224 426 CDD RPA1_DBD_B_like 44 146 - -
Seca7g02224 426 MobiDBLite consensus disorder prediction 378 426 - -
Seca7g02224 426 MobiDBLite consensus disorder prediction 378 394 - -
Seca7g02224 426 SUPERFAMILY Nucleic acid-binding proteins 35 149 IPR012340 -
Seca7g02224 426 Gene3D - 20 156 IPR012340 -
Seca7g02224 426 MobiDBLite consensus disorder prediction 397 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02224 Seca-Chr7 52124488 52127262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02224 42 309 Core DNA Replication Machinery Family AT5G61000 24.643 6.14e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02224 - - lja:Lj1g3v3385890.1 273.092