Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02213 ATGAGACCTATTCAAGAACCATCACTATCTATCCCACAACACAGTCCTTTCAGCGATAACTTCTACATCAATTTTTGTTTCAGCCATTCAATTTTTGTCCATCAACACTCCAACGGTACAAACTCTGTCTCTCACTTCACTGCATCCCCAGTAACGAACCGTATTTTCTTGGTCCCTATTGACATCTTATGTCATTGTGATGAGTCCACAGTCTTGGACCGAGAAAACACTATCTTCTTGCGCGACACGTTTTCCTCCTTGCGTATTCACCCTGAGATTTTGCATGAAATTCTACCTCACATGGGTCAATGCGCTAGACAGATGGTAGCTGAAGATAAGGATAAAGAGCGGAATGTGTGGGAGATGGATATAACGCTTCAAGTTACCACATCGGTTGGGATTAATAATGAGTGGGGTGTGAGTTTAGCATCCCAAATTGTGCATTTGTTAGAGAAAGTCGGAACAGATCATACTTGTCCTTATTCTACGGGACAATGTGCAATTTGTTTGGAGAAGTACTTATGTAATGGATCAAAGTCATCAGAACTTGTTCGCACTAAATGCTTCCATGTTTTTCATAAAAAGTGTATTCTCCAATGGCTTGAGCATTGCGAATCATCCTATCCTTGCCCGTTGTGTCGTTGTCAAATAATATGA 657 0.4094 MRPIQEPSLSIPQHSPFSDNFYINFCFSHSIFVHQHSNGTNSVSHFTASPVTNRIFLVPIDILCHCDESTVLDRENTIFLRDTFSSLRIHPEILHEILPHMGQCARQMVAEDKDKERNVWEMDITLQVTTSVGINNEWGVSLASQIVHLLEKVGTDHTCPYSTGQCAICLEKYLCNGSKSSELVRTKCFHVFHKKCILQWLEHCESSYPCPLCRCQII. 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02213 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 218 IPR013083 -
Seca7g02213 218 Pfam Ring finger domain 165 214 IPR001841 -
Seca7g02213 218 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 92 215 - -
Seca7g02213 218 SUPERFAMILY RING/U-box 165 217 - -
Seca7g02213 218 ProSiteProfiles Zinc finger RING-type profile. 166 214 IPR001841 -
Seca7g02213 218 Coils Coil 215 218 - -
Seca7g02213 218 SMART ring_2 166 213 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02213 Seca-Chr7 51833332 51833988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02213 149 217 C3H Transcription Factor Family AT4G12190 38.028 3.44e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02213 - - adu:110273516 144.05