Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02174 ATGGCTCACAATCACATCACCACCGATTCCCCTCTCTCTCGTCGCATAGTTCGTGCCTTCCTGCACTTCCTTGACCAGGTTGAACCTGGCCCTGGGGTTGATGCTGAAGGGATTGAGGTTGCTAGGGAGTGTTTGGCAGAGGCCTTTAAGGTTAACTCATCTCCTGTAGCTGGTGATCCTTCCAAATCTGATTCATTGATTGACATATTCAAGTCCCTTGAAGCAAACAAGCAATGTGAAACTAGTAAGGCAGATGTTGGTCCTCAACCAGGTTCTGTGGAAGCTTCCAGTTCATTCTCTGCCCAGGATCCTGCTCATGCTAAAAACCATTCCGAGGTATCAAAACCTTTGGATAATTTTTGCTTACCTTTTGTTCCACTTGCATTAGGCCCGATAACAGTGTCTAAAGATGAACTCTGTGGACAATTCTTTGCTGCTCTAGAGAAAAATCACTACTTTAGAAGCAATGTCGATGGGAGTGATGACCCAGTGCAACTGGAGAAAGCATCTCGTTTATTCGATGATGCTTTTATGGAGATGGAAAGATCTGGGTGTCGGCAGTTTAGTTTGAAGAATTTGGCTGAATCACTAAAATCACTAGGTAACAAGGCAATGCAATTCAAGCATTACTCTGATGCAATTGAGTTGTATAATTGTGCAATCGCGCTATATGAAAAGAGTGCTGTTTACTACTGCAACAGGGCAGCTGCTTACACTCAAATTAACAAATATACAGAAGCAATCCAAGATTGTCTTAGATCTATCGAGATTGATCCGAACTACAGCAAGGCATACAGTCGTCTAGGTTTAGCTTATTATGCACAAGGAAACTACAGAGATGCTATTGATAAAGGGTTTAAAAAAGCCTTGCAGTTGGATCCAAATAATGAGTCTGTTAAAGAAAATATACGGGTAGCTGAGCGTAAATTGATAGAAGAGCAACATCATGCAGATCACAATCAGGTATTATTAATTCTTTTATGCAAAGTCAGGTGTTATCCATATTTCTGTCTTTGGTACTGCATATGGTCACACTTACAGTATATGTTCAGGAGGAATGCACATAATACCTGA 1074 0.4125 MAHNHITTDSPLSRRIVRAFLHFLDQVEPGPGVDAEGIEVARECLAEAFKVNSSPVAGDPSKSDSLIDIFKSLEANKQCETSKADVGPQPGSVEASSSFSAQDPAHAKNHSEVSKPLDNFCLPFVPLALGPITVSKDELCGQFFAALEKNHYFRSNVDGSDDPVQLEKASRLFDDAFMEMERSGCRQFSLKNLAESLKSLGNKAMQFKHYSDAIELYNCAIALYEKSAVYYCNRAAAYTQINKYTEAIQDCLRSIEIDPNYSKAYSRLGLAYYAQGNYRDAIDKGFKKALQLDPNNESVKENIRVAERKLIEEQHHADHNQVLLILLCKVRCYPYFCLWYCIWSHLQYMFRRNAHNT. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02174 357 Pfam Homodimerisation domain of SGTA 14 71 IPR032374 -
Seca7g02174 357 Gene3D Immunoglobulin FC, subunit C 1 76 - -
Seca7g02174 357 SUPERFAMILY TPR-like 193 307 IPR011990 GO:0005515
Seca7g02174 357 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 189 323 - -
Seca7g02174 357 ProSiteProfiles TPR repeat profile. 228 261 IPR019734 GO:0005515
Seca7g02174 357 FunFam Small glutamine-rich tetratricopeptide repeat-containing protein alpha 2 76 - -
Seca7g02174 357 ProSiteProfiles TPR repeat profile. 262 296 IPR019734 GO:0005515
Seca7g02174 357 Pfam TPR repeat 237 276 - -
Seca7g02174 357 PANTHER LD24721P 1 320 IPR047150 -
Seca7g02174 357 MobiDBLite consensus disorder prediction 80 107 - -
Seca7g02174 357 MobiDBLite consensus disorder prediction 80 111 - -
Seca7g02174 357 Gene3D Tetratricopeptide repeat domain 189 322 IPR011990 GO:0005515
Seca7g02174 357 SMART tpr_5 194 227 IPR019734 GO:0005515
Seca7g02174 357 SMART tpr_5 262 296 IPR019734 GO:0005515
Seca7g02174 357 SMART tpr_5 228 261 IPR019734 GO:0005515
Seca7g02174 357 ProSiteProfiles TPR repeat profile. 194 227 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02174 Seca-Chr7 50972280 50991772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02174 193 292 U-box Gene Family AT3G07370 32.000 4.60e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02174 K16365 - gmx:100799770 516.924