Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02135 ATGGTTAAGACAGAGAACAAGATCCACACAGAGCCATCAAAGCCAACTAGGCCTTTATCTTCACCAAATGACAAGAAGAAGAAGTACAAAGGAGTCAGAATGAGAAGCTGGGGCTCATGGGTATCTGAGATTAGAGCACCAAATCAGAAAACAAGAATATGGCTTGGGTCTTATTCAACTGCAGAGGCAGCAGCCAGAGCCTATGATGCTGCACTTTTATGCCTTAAAGGTTCCTCTGCTAATCTGAACTTCCCTTTGAGTTCTTCACAGTTCATTCCTCAAGACACTTCTGTTATGTCCCCTAAATCAATCCAAAGAGTAGCTGCAGCTGCTGCTAACAGTTTTGTGGACAATGCTAGCACTAGCAATAGCATTAGTACACCACCTTCTCCTCCTCCTGCTTCAACCTCATCTTCATTGGTCTCATCCCCATCAATGTCATCATCTCCTTCAGATCAAATAGATGATGATGTTTCACTATTTTCATCACTTGGGGCCTACAATAGCTGTGATCAAGTAAATGAATCAATGGCTATGATGGAGTCTTGGTATGGATTTGATGGCCTGCAATCCCCAAAACATGTTGATCAAATGCTTAGTGGGGCTTTGTTTGATATTGATTCAACACATTTGCTTGATGATTGGTATGAAGAAAGTGACATTCCTTTGTGGAGCTTCTGCTGA 684 0.4211 MVKTENKIHTEPSKPTRPLSSPNDKKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPLSSSQFIPQDTSVMSPKSIQRVAAAAANSFVDNASTSNSISTPPSPPPASTSSSLVSSPSMSSSPSDQIDDDVSLFSSLGAYNSCDQVNESMAMMESWYGFDGLQSPKHVDQMLSGALFDIDSTHLLDDWYEESDIPLWSFC. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02135 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 163 - -
Seca7g02135 227 CDD AP2 27 87 IPR001471 GO:0003700|GO:0006355
Seca7g02135 227 MobiDBLite consensus disorder prediction 119 153 - -
Seca7g02135 227 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Seca7g02135 227 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
Seca7g02135 227 MobiDBLite consensus disorder prediction 136 153 - -
Seca7g02135 227 SUPERFAMILY DNA-binding domain 28 87 IPR016177 GO:0003677
Seca7g02135 227 Gene3D AP2/ERF domain 27 87 IPR036955 GO:0003700|GO:0006355
Seca7g02135 227 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Seca7g02135 227 MobiDBLite consensus disorder prediction 1 30 - -
Seca7g02135 227 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Seca7g02135 227 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Seca7g02135 227 FunFam ethylene-responsive transcription factor ERF014-like 27 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02135 Seca-Chr7 49572555 49573238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02135 1 226 AP2-EREBP Transcription Factor Family AT1G21910 45.174 4.97e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca7g02135 AP2 4.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02135 - - gmx:100813313 296.975