Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02094 ATGGATGGGAAACCTAACCATTTGCTCTCACCCACCTCTTCTTCCTCATCTCTCGATTTTCTCCGCCAAGTCAATGCAGCCCTTGAACGCCACCGCGCTCTCGGTACGACGCAATCAGATAGCATAAGGCCAAAGCGCTCCGCGGTTGCTCAACGGAATGTGGTGAACAAGTGTGAAGACTTTCCATCGAGTCAGGGTCAGTCAGGGAAAGACTCGCTTGCGCTTGGAAAGACCACCGCCTCTCTTGTTGGGGATGAAATGGAGTGGTTGGCAAGCAGCCAACTTGAAGCATCAACTGGATTCAATCAGGACTTGAAGCACCAAAATATTCAGCATGCAGAATCTGAAATAAGTTTGATATCTGAGGGAGGCAAAAGTTGTCTGTTGCCAAAGAGAACAATAGTTACTCAGGATCCTCTGCAGCAATTCCAAAAATTTTTAAGCCAACCAGCTACACAATCCTCAGTAGTGGGACCCTCATGTGCGACAGCTACATCAATCCATTCAACTTCAGCTCCAATGCTGAATACTTTAACTCGTTATTCCCATTCCCATGTGGATAGTGTCTCACATGTGGCTGCAGAACCTTGTGGGAACATTAATGTTAATCCTCATCCAATAACTCAAGAGTTTATTAAAGCACCGAATAATTCCCTAAAAGATACCAACAGAATATCAATTGGTCAGGTTGCAAGTGCAGTCCAAGCTTCCAATTCACTTATTGATGCAGAACTGCCACTTAAGAAGAGCGACCCATCTAAGGAGCAGCAAGGATGCATGTTAAAGGAAACTAGCATTTCAAAATATACTTCTTGTCATGATGACATGTTAACAAAGCAGAAAGACTCTGCAGTCGTTACCAACATACAGCCTCAGGCTCCGACTTCATCTTCAGATGCAAAGTCAGAATCTTCTAAGTTAGAAAAACCAGAGAAAGCTGCAAGTTGTAAAGGATCATCAGGCACTCGGAAAAGAACCTATGACCCTGATTTGTTTTTTAAAGTCAATGGCAAGCTTTATCAAAGGCTTGGAAAGATAGGCAGTGGTGGAAGCAGTGAGGTACACAAAGTGATTTCATCAGACTGTATGATCTATGCACTTAAAAAGATAAAGCTAAAAGGCCGTGATTATGCCACTGCATATGGATTTTGTCAAGAAATTGAGTATCTTAACAGGCTGAAAGGAAAGAGTAATATTATACAACTTATAGATTATGAGGTTACTGACAAGACTTTGCTTGAGGGAGTCACAAATGGGTCCTTCAGTAATAAGGATGGTCGAGTTAAGGATGATGCATATATATATATGGTACTTGAATATGGTGAAATTGATTTGGCTCATATGTTATCTCAGAAATGGAAGCAACTGGATGGATGCAACCAGACCATAGATGAGAACTGGCATCGATTTTATTGGCAGCAAATTCTCCAAGCTGTCAACACAATTCATGAGGAACGTATTGTGCATTCTGACTTGAAGCCAGCTAACTTTCTCCTTGTCAAAGGTTCCCTAAAACTGATTGATTTTGGTATAGCCAAAGCAATAATGAGCGATACAACAAACATTCAACGGGATTCACAGGTTGGTACTCTAAATTATATGTCACCAGAGGCATTTATGTGCAATGAGAGTGATGCAAATGGAAACATCATAAAATGTGGTCGGCCATCAGATATATGGTCCCTAGGCTGCATCCTTTATCAAATGGTATATGGAAGGACACCGTTTTCAGATTACAAGACATTTTGGGCCAAAGTCAAAGTTATAACTGATCCAAATCATCAAATTACTTATGAACCAGTTTCAAATCCATTGCTTCTGGATCTTATGAAAAGGTGTCTAGCATGGGATCGTAATGAAAGGTGGAGAATTCCTCAGCTACTCGAGCATCCTTTTCTTGCTCCTCCAGTTCCATGTCATCCATCTTTGTCCCAAGATCAAGACTTTAAATTGCTTCAAATTATTGCTGAAACTTGTACAGTTGACCCAGAAGCATTGCAGCTATGTTGTCAGCTCCAACAGCTGCTTGGAAATCCTTTCAAGTTAGTAACACCTCACTCATTAAATTCGCGAGACCAACAGCGTAAGCTGCTGTCCCGAATATCAGAACTTTGTGTTCAGCTGCAGGAACGATTGACAAATACTGATAAAGAAACAATAATTGGTGATGAAGGAAGCTAG 2181 0.4136 MDGKPNHLLSPTSSSSSLDFLRQVNAALERHRALGTTQSDSIRPKRSAVAQRNVVNKCEDFPSSQGQSGKDSLALGKTTASLVGDEMEWLASSQLEASTGFNQDLKHQNIQHAESEISLISEGGKSCLLPKRTIVTQDPLQQFQKFLSQPATQSSVVGPSCATATSIHSTSAPMLNTLTRYSHSHVDSVSHVAAEPCGNINVNPHPITQEFIKAPNNSLKDTNRISIGQVASAVQASNSLIDAELPLKKSDPSKEQQGCMLKETSISKYTSCHDDMLTKQKDSAVVTNIQPQAPTSSSDAKSESSKLEKPEKAASCKGSSGTRKRTYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCMIYALKKIKLKGRDYATAYGFCQEIEYLNRLKGKSNIIQLIDYEVTDKTLLEGVTNGSFSNKDGRVKDDAYIYMVLEYGEIDLAHMLSQKWKQLDGCNQTIDENWHRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLNYMSPEAFMCNESDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSDYKTFWAKVKVITDPNHQITYEPVSNPLLLDLMKRCLAWDRNERWRIPQLLEHPFLAPPVPCHPSLSQDQDFKLLQIIAETCTVDPEALQLCCQLQQLLGNPFKLVTPHSLNSRDQQRKLLSRISELCVQLQERLTNTDKETIIGDEGS. 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02094 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672|GO:0006468
Seca7g02094 726 PANTHER MIXED LINEAGE PROTEIN KINASE 52 665 - -
Seca7g02094 726 SMART serkin_6 340 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02094 726 Gene3D Phosphorylase Kinase; domain 1 333 418 - -
Seca7g02094 726 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Seca7g02094 726 ProSiteProfiles Protein kinase domain profile. 340 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02094 726 Pfam Protein kinase domain 340 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02094 726 CDD PKc_Mps1 338 633 IPR027084 -
Seca7g02094 726 Gene3D Transferase(Phosphotransferase) domain 1 454 636 - -
Seca7g02094 726 FunFam serine/threonine-protein kinase mph1 isoform X2 333 420 - -
Seca7g02094 726 SUPERFAMILY Protein kinase-like (PK-like) 334 642 IPR011009 -
Seca7g02094 726 MobiDBLite consensus disorder prediction 290 323 - -
Seca7g02094 726 FunFam serine/threonine-protein kinase mph1 isoform X1 454 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02094 Seca-Chr7 47533719 47541475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02094 346 633 MAP Kinase Kinase Kinase AT4G08470 29.452 2.85e-23 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Seca7g02094 Pkinase 6.9e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02094 K08866 - gmx:100816674 1085.09