Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02048 ATGAGCTCTTCATCCACTCAACTAGTCATCACAAAAAGGATGGACATATATGAGCCATTCCATCAAGTGAGCAGCATGTGGGGGGACAGCTTTAAAGTTGATGGCAGCCTGAATTCAATTGCTTCCCCAATGTTAATGAAGAACACTAACATGGAGAACAAGTCTGAATACACCCCTCATGAATCAAGGGAACCTTCTGGAGATGATCAAGAGAATACTGGCAAATCTGTTAGCAAGGTGCTAAGACGTCTAGCCCAAAATCGTGAGGCTGCTCGGAAATGTAGGCTACGAAAGAAGGCTTATGTTCAACAATTGGAAACAAGCCGTTTGAAGCTTATGCAGTTGGAGCTGGAGATTGAGAAATCAAGAAAACAGGGTTTATACATAGGCAGTGCATTAGATGTCAGTTATATGGGGTCATCTGGAACAATAAACCCAGCCCTTATAGCCTATGTGGCATTCTTGAATAAGGTCCTCCTGTTCTGTGAAGCAGGGTTGTCTGTGTTTGAAATTGAATATGCACGTTGGGTTGAAGAGCAGGATAGACAGAATGGGGAACTAAGAAATGCATTGCAAACAAATGCATCTGATATACAGCTTCATCTACTTGTTGAGAATAGCTTGAACCACTACTCAAATCTTTTCAGGATGAAAGCAGATGCTGCAAAAGCTGATGTCTTTTATTTGATCTCTGGTGTGTGGAAAGCATCAGTAGAACGCCTTTTTCTTTGGATTGGAGGATCCCGCCCTTCACAGCTTCTCAATATCATTGTACCACAGCTTCAGTCTTTGACTGATCAACAAATTGCCAGCATTAACAACCTCCGTCTATCATCTCAGCAAGCTGAAGATGCTCTTTCACTTGGGTTGGAGAAACTCCAGCAGAGTCTGGTCCACAACATACAAGCTGATCCGTTGGTTGTAGGAAACTATGGGCTTCAGATGGCTGCTGCCATAGACAAAGGTGAAGCACTAGAAGGTTTTGTAAACCAGGCAGATCACCTTAGGCAACAAACTCTGCTATACATGTCTCGCATTCTGACAATTGGGCAAGCTGCTCAAGGCTTGCTGGCTATGGGGGAATACTTTTACCGACTTCGCACTCTTAGTTCTTTATGGACTGCTCGTCCATGTGATCCTGCTTACACTACTCAACACTCAAATTGA 1167 0.4344 MSSSSTQLVITKRMDIYEPFHQVSSMWGDSFKVDGSLNSIASPMLMKNTNMENKSEYTPHESREPSGDDQENTGKSVSKVLRRLAQNREAARKCRLRKKAYVQQLETSRLKLMQLELEIEKSRKQGLYIGSALDVSYMGSSGTINPALIAYVAFLNKVLLFCEAGLSVFEIEYARWVEEQDRQNGELRNALQTNASDIQLHLLVENSLNHYSNLFRMKADAAKADVFYLISGVWKASVERLFLWIGGSRPSQLLNIIVPQLQSLTDQQIASINNLRLSSQQAEDALSLGLEKLQQSLVHNIQADPLVVGNYGLQMAAAIDKGEALEGFVNQADHLRQQTLLYMSRILTIGQAAQGLLAMGEYFYRLRTLSSLWTARPCDPAYTTQHSN. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02048 388 Pfam bZIP transcription factor 79 108 IPR004827 GO:0003700|GO:0006355
Seca7g02048 388 PANTHER TRANSCRIPTION FACTOR TGA9 2 378 - -
Seca7g02048 388 SUPERFAMILY Leucine zipper domain 79 112 IPR046347 GO:0003700|GO:0006355
Seca7g02048 388 ProSiteProfiles DOG1 domain profile. 166 376 IPR025422 GO:0006351|GO:0043565
Seca7g02048 388 MobiDBLite consensus disorder prediction 53 74 - -
Seca7g02048 388 Coils Coil 98 125 - -
Seca7g02048 388 Pfam Seed dormancy control 185 258 IPR025422 GO:0006351|GO:0043565
Seca7g02048 388 FunFam BZIP family transcription factor 78 127 - -
Seca7g02048 388 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 82 97 IPR004827 GO:0003700|GO:0006355
Seca7g02048 388 Gene3D - 78 127 - -
Seca7g02048 388 MobiDBLite consensus disorder prediction 54 70 - -
Seca7g02048 388 SMART brlzneu 75 135 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02048 Seca-Chr7 45832457 45838126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02048 2 380 Calmodulin-binding Proteins AT1G77920 53.181 2.20e-133 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca7g02048 DOG1 1.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02048 K14431 - gmx:100775882 590.112