Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02012 ATGGGTCGTGTTAAACTTGAGATAAAAAGAATAGAGAACGTCACAAATCGACAAGTTACATTCTCAAAGCGTAGAAATGGCCTCATCAAGAAAGCCTATGAGTTGTCCATCCTTTGTGACATTGATATTGCCCTTATAATGTTTTCTCCTTCAGGACGTCTTAGCCATTTTTCTGGAAGGAGGAGGATTGAAGATGTTTTCACTCGTTATATTAATCTTCCTGATCAAGAAAGAGATAACGCTGTAAGTTTTCCTGAGCTACCTTATCGCAGGGGTATTCAGAATAAGGAGTATTTGCTTAGGACGCTTCAACAACTTAGGAGTGAAAATGACATAGCTCTTCAGCTGGCCAATCCGGGAGACATTAACTCCGAGATTGAGGAACTTCAACAAGAAGTTAGTAGGTTACAACAACAACTTCAAATGGCCGAGGAGCAGATAAGGATATATGAACCTGACCCATTAAAGATGACATCTATAGGGGAGCTTGAAACCAACGAAAAGAACCTAATGGACACCTTGACACGTGTCATGCAAAGAAAGGAATATTTGCTAAGCAACCACCTATCTTCGTATGATCCATCTGGAATTCAGGGGATGCCTACCTCATTCGAGAATGTAGGTTGGTTGCAGGACGGTAGTCAGAATCATCCCCAGATTTTTGATGCATCCACACCATTGGATACTCTCAGGTTGGATTTGTCCTCCACTGTGTATGGCTCATTTTCACAAGGCACAAGTTCAAATGCTGATCCACGAGGCATAGGGGAGTGTCACGTGGCAAATCCAAGCGATGGGAACCTTCAAACATGGCCTCAAGGATACACATTATATCCTCATATTCAACATGACATGGTGGGACCTGACATGCAAGATATGATGCCACATGGGCAAGTGAACATCCCAATCACTGCCTCACATGTGGAACCTCCTAAGAGTGAACCTGCACCAGAATATGATCAGTGTAAACAACCTCATCCTCATCAGCTTAATGGTCAATGA 1002 0.4271 MGRVKLEIKRIENVTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGRRRIEDVFTRYINLPDQERDNAVSFPELPYRRGIQNKEYLLRTLQQLRSENDIALQLANPGDINSEIEELQQEVSRLQQQLQMAEEQIRIYEPDPLKMTSIGELETNEKNLMDTLTRVMQRKEYLLSNHLSSYDPSGIQGMPTSFENVGWLQDGSQNHPQIFDASTPLDTLRLDLSSTVYGSFSQGTSSNADPRGIGECHVANPSDGNLQTWPQGYTLYPHIQHDMVGPDMQDMMPHGQVNIPITASHVEPPKSEPAPEYDQCKQPHPHQLNGQ. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02012 333 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca7g02012 333 MobiDBLite consensus disorder prediction 306 333 - -
Seca7g02012 333 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca7g02012 333 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca7g02012 333 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca7g02012 333 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 208 - -
Seca7g02012 333 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca7g02012 333 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca7g02012 333 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Seca7g02012 333 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca7g02012 333 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Seca7g02012 333 Gene3D - 14 86 IPR036879 GO:0003677|GO:0046983
Seca7g02012 333 Coils Coil 126 146 - -
Seca7g02012 333 FunFam MADS-box transcription factor 41 13 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02012 Seca-Chr7 43636006 43640090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02012 1 305 Type I MADS-box Gene Family AT1G22130 59.048 1.36e-119 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca7g02012 SRF-TF 3.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02012 - - pvu:PHAVU_008G170400g 575.474