Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01977 ATGACGAACCAGAATGTGGTTGGTGCTCCTATTGGGAAATCACATGTGAATAACACACTTGTGGAGTTAGCAATGTCGATTTCAAACTCTAATATTGTGTTACCAAGAGCATCACTGCCTGAATTAATGGCTTTGCTTGGTGGGTTAACATTTTTGGGGCAACCCCAGAAGAAGCTATTGAAAGATGGTGGTGGTGGAAAAAAAGTTGTTAACACATGGATTGATTCTATGAGAGCTTCTTCACCCACTAGAGTCAAATCATCATCTCCCACTAAAACTGTTTATATATATATATCTATGCAGCTTTACCATCCTTCAGCACTGAACATGTTTGATCAGATTATGTATAATTCCAAAGGGAAACAGATTGTGACTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTTGCAGATCCAGATAAAGCTTACATGAGCAAAAAGATGAGAGCCACATTAAAGGACATAGCAAGGCATTTTCCCACAGCCATAGTGAGTGGAAGGTGCATAGACAAGCTTTATAGCTTTGTGAGATTGGCAGAACTGTACTATGCTGGAAGCCATGGCATGGACATCAAGGGACCAACTAATAACGGGAATAATAATAATAATGATAATGAAGGGGTTCTTTTCCAGCCTGCAAGTGAATTCCTACCCATGATCAATGAGGTGTACAAGATCTTGGTGGAAAAAACAAAGTGTGTCCCGGGGGCTAAGGTAGAAAATAACAAGTTTTGCTTGTCCGTGCACTTTCGCTGCGTTGACGAAAAGAGTTGGGCAGCATTGGCAGAGCAAGTTACCTTAGTGGTCAATAAGTACCCAAAACTGAAGCTAACTCAAGGAAGAAAAGTGTTAGAGATTCGACCAACCATAAAATGGGACAAGGGCAAGGCTCTTGAATTCTTGTTAAAGTCACTAGGATATGCAAATTCTAACAACGTATTTCCAATCTATATTGGTGATGATCGAACTGACGAAGATGCTTTTAAGGTTTTACGCAATAGTGGTCAAGGAATTGGAATTCTTGTTTCTAAAATTCCAAAAGAAACAGACGCTTCCTACACTTTGCAAGATCCATCAGAGGTTGGACAATTTTTGCGGCATTTGGTGGAATGGAAAAAAACAAGTTCTCACTACCGCAAGTTGTAG 1149 0.4003 MTNQNVVGAPIGKSHVNNTLVELAMSISNSNIVLPRASLPELMALLGGLTFLGQPQKKLLKDGGGGKKVVNTWIDSMRASSPTRVKSSSPTKTVYIYISMQLYHPSALNMFDQIMYNSKGKQIVTFLDYDGTLSPIVADPDKAYMSKKMRATLKDIARHFPTAIVSGRCIDKLYSFVRLAELYYAGSHGMDIKGPTNNGNNNNNDNEGVLFQPASEFLPMINEVYKILVEKTKCVPGAKVENNKFCLSVHFRCVDEKSWAALAEQVTLVVNKYPKLKLTQGRKVLEIRPTIKWDKGKALEFLLKSLGYANSNNVFPIYIGDDRTDEDAFKVLRNSGQGIGILVSKIPKETDASYTLQDPSEVGQFLRHLVEWKKTSSHYRKL. 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01977 382 Gene3D - 228 381 IPR023214 -
Seca7g01977 382 Gene3D - 123 211 IPR023214 -
Seca7g01977 382 FunFam Trehalose 6-phosphate phosphatase 220 379 - -
Seca7g01977 382 FunFam Trehalose 6-phosphate phosphatase 214 290 - -
Seca7g01977 382 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 64 378 IPR044651 GO:0004805|GO:0005992
Seca7g01977 382 NCBIfam HAD-IIB family hydrolase 126 333 IPR006379 -
Seca7g01977 382 Pfam Trehalose-phosphatase 126 360 IPR003337 GO:0003824|GO:0005992
Seca7g01977 382 CDD HAD_TPP 126 363 - -
Seca7g01977 382 NCBIfam trehalose-phosphatase 121 370 IPR003337 GO:0003824|GO:0005992
Seca7g01977 382 SUPERFAMILY HAD-like 126 373 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01977 Seca-Chr7 42329251 42332069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01977 119 369 Trehalose Biosynthesis Gene Families AT1G70290 26.119 1.60e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01977 K01087 - gmx:100792915 572.007