Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01948 ATGATGGAACCTACTGAAACTGAAAAAACTTTTGAGGTTGATCCCAAAAATTCTAAATCCCCCAATAAAGATAATTTGGATTCTGATAAGATTCCTGAAGGTTACAAAAGGATAAGTGAACTAACAGATGAGGATATCAGAGGGCTTGAGTTTGATACAGAAGAGGATGCATATGATTTCTACCGTGAGTATGCTAAATTCATAGGATTTTCTGTTAGGAAAGGTGATGTCTATAGAAATTGTAATGGTTCAATTACAATGAGGCAATTGGTTTGTAATAGAGAGGGAGAGAGAAGTGAGAAGCATCTTAATAGGACTGATAGACTTAGGGAGGCAAAGGCTTTGACCCGAACTGGTTGTAAAGCAAGGCTCCGTGTTTCCTTAGATTATAGAAGTAGAAAGTGGAGGGTTGGAATCTTTGAGCCAGCTCACAACCATGAATTGACTCCTGAAATTATGATACATTTTCTACCTGCTTATCGTGGGTTGAGTGTAGCTGATAAGGCACAAGTTGATTGTATACATCATTATGGTGTTAGGACTTGTCATATAATGGGTCTTATAATGGTTCAAAAGGGAGGCTATTCTGATCTTGGTTTTTGTAAGAAGGATTTGTACAGTCATATTGATAAAGATAATCGGGAAAAAATAGACGATGGGGATGCTTTTGCTGCGTTGTGTTACCTTCAATCAAAGTTTGACAACAATCCAATGACATTTATAAAGTTTACAACCACTGAAGATCATAAACTTGAAAACCTGTTTTGGTCTATTGTAGGAAGTAGAATTGATTATATTTGTTTTGCAATGTTCAATAAAGTTCCTAAGGTTGTGGTTACTGATGGAGATGGTGCAATGCGTGAAGCTATCAGGTCTGTTTTTCCCGGTGCTCTTCACAAGTTGTGTGCATGGCACCTTCACCAAAATGCTTGTGAGAATGTTAAGAATCCCAAATTCCTTGAAGATTTTAAGACCCTAATTTATGGAAATTTTAGTCGTCAAAAGTTTGAGGATGAGTGGAACAAGGATGTTGACAAACATGGACAACTTCTATATGTGAAGGAATTAACTCATTCATTAAGAGGTATGTTCAGAGCAAAAAATAGCCTTGTTGATTTTCTTCACAATTTTGAGAGAGCTCTCAATGAATATAGACACAACGAGTTAACTTCAGATTTCAAGTCGAAATACACTCAACCTATGATGACTACTACTTTGGAAAGATATGAAGTTCAAGCTTCAAATGTCTACACGAGGAATAAGTTTTTTGATGTTCAAAAGCAAATTGAGAAAGTTGATGCCATAAATGTGATTGAGAGGATGGATGTTGGTAATGTTATTACATTGAAGATGAATAAATTTGAAACTCCCGATTCTTCTTATATTGTTATGTTGGATAAGTCTTATGTGGAATCCATTCCTGCATCTTTGATTTTGAAAAGGTGGACTAAGTTGGCTAAAGTTGAACACATTTCTTCTGTTTATGCTGAAGAAGGTGACACATCAAAGAAAGACTTATTGAGGTCCGGTGCTGTTGGTGTTGCATGTAACAGGCTTAACAAGGTTTCCCGTAGAAATCCTCTCAATTTTGTAAAGAACATTGAATCTATTCATAATTTAGCAGAACAGATAGAAAGGCAGGAAAGTATTGACTTGAACATTATTGATATATCAAGAGTTGTCTGTGACCCAACTGTTGTTAAAACTAAAGGTGCCCCTCGAAAGAATAAGAAAATGAAAAAAAAAAGGAAATGTTCTTATTGTAAACGTCCAGGCCACACAGTTAGGACATGCACTAAATATGCTACTCGTGATCAGTTGGATACAGTTATTGAAGAGGAATCATCTGTTGAGACTGATGAAGATTCAAGAGATGAAAGTAGGTCACGGGATGTTCTCATTTCTAACCATTTGAATGATGTAACAGTCTCTGCTGGTCAGAATTGTGCTTCAGACAAGGGTCAGTCTAAGAAGAGAAGGAAAAATAGTCAAGGGTTGAAATTGACCCAAGAATCAGTTAATGAAAGGAGGTCCAGTGATGTGAACAAAGGTCAACAGAATGATACTGGTATTGCATTCAGCGGAATGAATACCCCCTCCTTATTTAGTAATCATCTGTACTATTCAAACGTGAATGGTCCGAGTATTTCAAGACCTGTGCATATTAGACCTTCAATGATTCATGGATTTGGTCAAGGATTTGTTGGTAATAGAGTTGAGGACATGGTACAGTATCCCCAAATGTATATGCAACAATCTCTGTATACACCTCCAGTAGTTCACAATTTTAACCAATATGGTAATAGCTTACAGAATCACAAGTGTATGACATTTGATATTAGTGGTTATGGTTTAATTGAATAA 2364 0.3629 MMEPTETEKTFEVDPKNSKSPNKDNLDSDKIPEGYKRISELTDEDIRGLEFDTEEDAYDFYREYAKFIGFSVRKGDVYRNCNGSITMRQLVCNREGERSEKHLNRTDRLREAKALTRTGCKARLRVSLDYRSRKWRVGIFEPAHNHELTPEIMIHFLPAYRGLSVADKAQVDCIHHYGVRTCHIMGLIMVQKGGYSDLGFCKKDLYSHIDKDNREKIDDGDAFAALCYLQSKFDNNPMTFIKFTTTEDHKLENLFWSIVGSRIDYICFAMFNKVPKVVVTDGDGAMREAIRSVFPGALHKLCAWHLHQNACENVKNPKFLEDFKTLIYGNFSRQKFEDEWNKDVDKHGQLLYVKELTHSLRGMFRAKNSLVDFLHNFERALNEYRHNELTSDFKSKYTQPMMTTTLERYEVQASNVYTRNKFFDVQKQIEKVDAINVIERMDVGNVITLKMNKFETPDSSYIVMLDKSYVESIPASLILKRWTKLAKVEHISSVYAEEGDTSKKDLLRSGAVGVACNRLNKVSRRNPLNFVKNIESIHNLAEQIERQESIDLNIIDISRVVCDPTVVKTKGAPRKNKKMKKKRKCSYCKRPGHTVRTCTKYATRDQLDTVIEEESSVETDEDSRDESRSRDVLISNHLNDVTVSAGQNCASDKGQSKKRRKNSQGLKLTQESVNERRSSDVNKGQQNDTGIAFSGMNTPSLFSNHLYYSNVNGPSISRPVHIRPSMIHGFGQGFVGNRVEDMVQYPQMYMQQSLYTPPVVHNFNQYGNSLQNHKCMTFDISGYGLIE. 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01948 787 PANTHER OS01G0519700 PROTEIN 44 268 - -
Seca7g01948 787 Pfam MULE transposase domain 263 309 IPR018289 -
Seca7g01948 787 SUPERFAMILY Retrovirus zinc finger-like domains 571 602 IPR036875 GO:0003676|GO:0008270
Seca7g01948 787 MobiDBLite consensus disorder prediction 1 34 - -
Seca7g01948 787 MobiDBLite consensus disorder prediction 634 652 - -
Seca7g01948 787 Pfam FAR1 DNA-binding domain 59 149 IPR004330 -
Seca7g01948 787 MobiDBLite consensus disorder prediction 609 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01948 Seca-Chr7 41652912 41656110 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca7g01948 FAR1 5.1e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01948 - - tpra:123910662 486.108