Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01946 ATGACAGCAATAAACAACAACCGGTTAAAGTTGATTATTTCACCCTCGATACCCTGCATTTGCTCTATATGCTTTGATTCCAAAACAAGACCTGATATGTTCAGAACAGGAAAATGCAACCATAGATTTTGCACTGACTGCATGTCCAAACATGCTGCTGCTAAAATACAGCAACATATTGTGAAGGTGAAATGTCCAAATCCAGAATGTTATGCGGAATTGGAGCCAGAAAATTTGGAATCTGTTTTGCCTGAAGAAGTTATTGTTCAATGGAAATCTCTAATATATGAGTATTCAATTGATTGGTGGAAAAAGATTTACTGTCCTCTTGAGAATTGA 339 0.3628 MTAINNNRLKLIISPSIPCICSICFDSKTRPDMFRTGKCNHRFCTDCMSKHAAAKIQQHIVKVKCPNPECYAELEPENLESVLPEEVIVQWKSLIYEYSIDWWKKIYCPLEN. 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01946 112 ProSitePatterns Zinc finger RING-type signature. 39 48 IPR017907 -
Seca7g01946 112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 101 IPR013083 -
Seca7g01946 112 ProSiteProfiles Zinc finger RING-type profile. 21 66 IPR001841 -
Seca7g01946 112 FunFam RBR-type E3 ubiquitin transferase 17 102 - -
Seca7g01946 112 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 21 109 IPR031127 GO:0004842|GO:0016567
Seca7g01946 112 Pfam Zinc finger, C3HC4 type (RING finger) 21 66 IPR018957 GO:0046872
Seca7g01946 112 SUPERFAMILY RING/U-box 20 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01946 Seca-Chr7 41581805 41582143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01946 21 109 C3H Transcription Factor Family AT2G31770 32.609 1.43e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01946 K11975 - mtr:25490784 117.857