Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01934 ATGGCTGATTCACTATCAGTTAATGTTGATTCCACACCTAAGCTTGAATTGTATACTAAACAGGAACATAGAACTCCCCATGAGACTGAACATTCAGACTCTCCATCTAGCATCCAAAAGGCTATTGCTGAGTTCGTGGGTACATACATTCTTATATTTGCTGGTTGTGGAGCTGCTCTTATCAATGAGAAGCTGCCACTTACAATAGTAGGCATAGCCATCGTTTCAGGCCTAGCTTTGACGGTTGCTACATATTCAGTTGGTCATGTTTCTGGTGGCCATTTCAATCCTGCAGTCACAATTGCCCTGGCTGCTGTCCGAAAAATTCAATTGAAACTTGTAAGCCACTTGTTCTAA 357 0.4202 MADSLSVNVDSTPKLELYTKQEHRTPHETEHSDSPSSIQKAIAEFVGTYILIFAGCGAALINEKLPLTIVGIAIVSGLALTVATYSVGHVSGGHFNPAVTIALAAVRKIQLKLVSHLF. 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01934 118 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g01934 118 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g01934 118 MobiDBLite consensus disorder prediction 1 15 - -
Seca7g01934 118 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Seca7g01934 118 MobiDBLite consensus disorder prediction 1 36 - -
Seca7g01934 118 PANTHER AQUAPORIN NIP2-1 24 114 IPR034294 -
Seca7g01934 118 MobiDBLite consensus disorder prediction 16 34 - -
Seca7g01934 118 Pfam Major intrinsic protein 33 114 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g01934 118 Gene3D Glycerol uptake facilitator protein. 4 117 IPR023271 -
Seca7g01934 118 SUPERFAMILY Aquaporin-like 36 114 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01934 Seca-Chr7 41294556 41295109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01934 15 114 Major Intrinsic Protein MIP AT4G19030 41.228 1.78e-21 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01934 K09874 - gmx:100798380 178.718