Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01916 ATGGCTTACCCACATTACCGATCACAGTTTGGAGACACAACTTTCACAAAAGTGTTTGTTGGAGGATTAGCTTGGGAGACTCCAACTGAAGAAATGCGCAAATATTTTGAGCAATTTGGTGACATTCTTGAAGCTGTCATTATCACTGATAAGAACACATCAAAATCTAAAGGCTATGGATTTGTAGTAACATTCCGTGATCCAGAATCAGCTAGAAGGGCTTGTGCTGATCCAAACCCAGTAATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTAGGAAGACCTAGACCATCACCACCAAGAGGGAGGAGTAGTAGTACTACATTTCAAGGAGGGGTGGTGGGGACAGGAGGAGGAGCACCAGGTGCAGCGGCGGCGTACGGTGGTGTTCCGGCAGCAGGGCCACCACCACTGCCACCACCACCACCAATACTGTACCCTCCATATGGCTACCCTACCTACACCCCTGATTATGGGTACCACCAAGCCACATTGTATAATCCTCAGATTCAGCAACCACAATACTATCATCAACAACTCTATGGACCATCATCTTCCACTATGGCAACCCCATATTACTATGGCTATTCTGTGCAAGCACCAAGGGGTACATTTTCTACACCCCAACCACATCGCATACCAGCTGGAACGTCCTATCTATACTACCCTACACCAATTGAAGGTTCCTTCTCTGCATATCGTCCACCTCAACAATTAGCAATAAGGCAAACCCCTCCTTCCCCTAGTGATTCACAGACTCAGCAGCGTACCTCCTCAGAGACAGCAACTGGAGTAGTTATAACTTCAGAAAGTTCAAATACCCAAGGGAAGAACTAA 843 0.4626 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTSKSKGYGFVVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRSSSTTFQGGVVGTGGGAPGAAAAYGGVPAAGPPPLPPPPPILYPPYGYPTYTPDYGYHQATLYNPQIQQPQYYHQQLYGPSSSTMATPYYYGYSVQAPRGTFSTPQPHRIPAGTSYLYYPTPIEGSFSAYRPPQQLAIRQTPPSPSDSQTQQRTSSETATGVVITSESSNTQGKN. 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01916 280 MobiDBLite consensus disorder prediction 238 280 - -
Seca7g01916 280 FunFam RNA-binding protein 24-B isoform X1 3 111 - -
Seca7g01916 280 PANTHER BOULE-RELATED 6 261 - -
Seca7g01916 280 MobiDBLite consensus disorder prediction 92 115 - -
Seca7g01916 280 SMART rrm1_1 17 90 IPR000504 GO:0003723
Seca7g01916 280 SUPERFAMILY RNA-binding domain, RBD 15 115 IPR035979 GO:0003676
Seca7g01916 280 Gene3D - 3 111 IPR012677 -
Seca7g01916 280 MobiDBLite consensus disorder prediction 237 280 - -
Seca7g01916 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 76 IPR000504 GO:0003723
Seca7g01916 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Seca7g01916 280 CDD RRM_RBM24_RBM38_like 16 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01916 Seca-Chr7 40954367 40960411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01916 12 93 C2H2 Transcription Factor Family AT2G19380 37.805 1.09e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01916 K25006 - gmx:100788516 410.609