Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01896 ATGGAGCGCTACGAGATTCTCAAAGATATTGGGTCTGGGAATTTTGCTGTGGCCAAGCTTGTTAGGGACATCTACACCAAAGAATTTTTTGCTGTCAAGTTTATTGAGAGAGGCCAGAAGTTGTTTCTGGTCACTGGAAATATTGTACTTCAGATTGATGAGCATGTCCAGAGGGAAATCATGAACCATAGATCATTGAAGCATCCCAATATTGTTAGATTCAAAGAGGTCCTGCTGACACCAACACATCTAGCCATAGTAATGGAATATGCAGCCGGAGGAGAACTCTTTGAGAGAATATGCAGTGCTGGTAGATTTAGTGAAGATGAGGCAAGATTTTTCTTTCAGCAATTGATATCAGGGGTCAGTTACTGTCATTCAATGCAAATCTGTCATAGAGATCTGAAGCTTGAAAACACACTCTTAGATGGAAGCACTGCGCCACGAGTCAAAATTTGTGACTTTGGATACTCAAAGCTAATGTTAATTTGTTTTTACCTTGTCTTTCAGTCATCTGTATTGCATTCACAACCCAAATCTACAGTAGGAACTCCAGCTTACATTGCACCTGAGGTTCTGACGAGAAAAGAATATGATGGGAAGATTGCAGATGTTTGGTCTTGTGGAGTCACTTTATACGTGATGTTAGTTGGGGCTTATCCTTTTGAAGACCCAGAGGATCCGAGAAATTTTAGAAAAACCATTGGTAGGATATTAAGTGTTCAATACTCAGTCCCTGATTATGTACGAGTCTCCTTGGAATGTACACATCTTCTATCACAAATATTTGTGGCAAGTCCTGAAAAGAGAATAACAATACCAGAAATTAAAAACCATCCATGGTTTTTGAGGAACTTACCCATAGAATTAATGGAAGGTGGAAGCTGGCAAAGCAATGATGTAAATAATCCATCACAAAGTGTTGAGGAAGTCCTGTCCATTATACAAGAAGCAAGCAAACCTCTTAACATCCCCAAGACTGGTGGCCTTCTCATTGGAGGCAGCATGGACCTGGATGACTTGGATTGTGATGCAGATTTTGAAGATATAGAAACAAGTGGTGATTTTGTGTGTCCTCCTCTTTAA 1086 0.3996 MERYEILKDIGSGNFAVAKLVRDIYTKEFFAVKFIERGQKLFLVTGNIVLQIDEHVQREIMNHRSLKHPNIVRFKEVLLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSTAPRVKICDFGYSKLMLICFYLVFQSSVLHSQPKSTVGTPAYIAPEVLTRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIGRILSVQYSVPDYVRVSLECTHLLSQIFVASPEKRITIPEIKNHPWFLRNLPIELMEGGSWQSNDVNNPSQSVEEVLSIIQEASKPLNIPKTGGLLIGGSMDLDDLDCDADFEDIETSGDFVCPPL. 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01896 361 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Seca7g01896 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Seca7g01896 361 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Seca7g01896 361 PANTHER SERINE/THREONINE KINASE 2 301 - -
Seca7g01896 361 SMART serkin_6 4 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g01896 361 CDD STKc_SnRK2 3 281 - -
Seca7g01896 361 Pfam Protein kinase domain 4 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g01896 361 ProSiteProfiles Protein kinase domain profile. 4 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g01896 361 FunFam Serine/threonine-protein kinase SRK2E 91 290 - -
Seca7g01896 361 Gene3D Transferase(Phosphotransferase) domain 1 91 289 - -
Seca7g01896 361 SUPERFAMILY Protein kinase-like (PK-like) 1 291 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01896 Seca-Chr7 39994331 39998242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01896 3 301 CBL-interacting serine-threonine protein kinases AT4G24400 40.333 2.02e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Seca7g01896 Pkinase 1.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01896 K14498 - gmx:100798091 613.609