Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01879 ATGGTTGTGGTGTTCTTGTGCAACTTGTGTGGGACTATCATAGCAGCCCCTGTTTGCTTTCTAGCAGAAGGAAACTTGAGCGCTTGGAAAATAAAACCTGATATAACACTGGTGTTTGTTTTATACTCAGATGAAAATTCTGGAGATGTGAATCATGATTCAGCATCTTCATCCACCATCAAAGTCAAAGCGAAGTATGACTCATCCTATCATGAAATTCGTATCAGTTCCCATGCTAGTTTTGGGGAATTGAAGAAAATGTTGGCAGAACGTACTGGATTGCATGCTCAGGACCAAAAGTTGATTTTCAAGAAAAAAGCTTTGGAGGTTGCTGGTTCTAGTGGTGAGATTATAGCAGAGTTTGACAGAAAATTTGATGAGAATATTGGTTGCATTGTATGA 402 0.3905 MVVVFLCNLCGTIIAAPVCFLAEGNLSAWKIKPDITLVFVLYSDENSGDVNHDSASSSTIKVKAKYDSSYHEIRISSHASFGELKKMLAERTGLHAQDQKLIFKKKALEVAGSSGEIIAEFDRKFDENIGCIV. 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01879 133 PANTHER BCL2-ASSOCIATED ATHANOGENE 28 107 IPR039773 GO:0051087
Seca7g01879 133 SUPERFAMILY Ubiquitin-like 46 108 IPR029071 -
Seca7g01879 133 ProSiteProfiles Ubiquitin domain profile. 58 109 IPR000626 GO:0005515
Seca7g01879 133 Gene3D - 58 113 - -
Seca7g01879 133 Pfam Ubiquitin family 60 109 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01879 Seca-Chr7 39487679 39489644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01879 1 43 Nodulin-like Gene Family AT5G40240 51.163 7.01e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01879 - - gmx:100792005 100.138