Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01868 ATGGCGTTGAACCACAGAAAGCTCTTTCCAGGAGAAACTAACACAAACCAAACCCAAGATTGTTATGGCTTTTGTGACCCATCATGTCCTTACAATTGCTACTCAAACCCTGACTACTACTACACTCCACCACCACCATCTATTTTGACTTCTGAAAACTCAAACCAAGTTAACCATATCTCCACCTACTTGATCATCCTTGTTTGTTTGTTCACAATAATCTTTATAGTTGTTGGTTTCTACGTGATCAAAGTGAAGTGTTATGATACATGGTGTGGCTGGAGAGTTAACAACTCTGTTCCTTCTCAAACAGATAACTCTGAAGAGTTTCTCAATGAGAACCAAGTTGATCACCCTGTGTGGCTTATAGCCACGGTTGGGTTGCAACAATCAATGATTAATTCAATTACAGTGTGTAAATACAGAAGGGATGAAGGGTTGATTGAAGGAACTGAATGTTCAGTGTGTTTGAATGAGTTTCGTGAAGATGAAACGTTAAGACTCTTGCCAAAGTGTAACCATGCTTTTCACATCCCCTGTATTGACACTTGGTTGAGATCTCATACCAATTGTCCTCTTTGCCGTGCTGGTATTGTCTCTAACAATGTTCCTCCTCCTGAAGCAGTGGTGTCAAGTTTGGCTACTTTGGGGAGGGAAAATACAAACTTTGGAAGAAATCAAGAGACCCAGATGGAGAATTCAAGGAATGATGGTGGATTAAGTAACAACAGGATTGTTAATGGGGACTTGGAAAACAGGGCTGGAACAGGGGAATCAAGTGAAGCACTTCAGTTCACTGATGAGTCAAATTCCAAGGAGCGTGTAATCAATGACCCAATTCAGAATCAAGGGGTTGTAAATGATGAGATACAAACAGAAATTGGGTCTGCTTCAGTTGATCCTAGATTGGCTGGTGGTGGTGATTGTCTTGATCCAGGTGAGGTCAATTCTTGTTCTATAGAGCCTGAATGTCATCATCATGTTGTTGATCATACACAGGATGAGACAGAGTTGCACAAGGGTAATACACAAGATGATGATTACTCAAAAACGTGTAAAATAATGCGTCGTTCTTCAATTGAACAATGTTTGCACATAAGTCCGGTAACTATGAAAAGGTCATTCTCCTGGAATGGAAGGATTTTATCTACAAAAGGTTACATGAGTCTAAACTCAACTCTTCCCTATTAG 1191 0.4022 MALNHRKLFPGETNTNQTQDCYGFCDPSCPYNCYSNPDYYYTPPPPSILTSENSNQVNHISTYLIILVCLFTIIFIVVGFYVIKVKCYDTWCGWRVNNSVPSQTDNSEEFLNENQVDHPVWLIATVGLQQSMINSITVCKYRRDEGLIEGTECSVCLNEFREDETLRLLPKCNHAFHIPCIDTWLRSHTNCPLCRAGIVSNNVPPPEAVVSSLATLGRENTNFGRNQETQMENSRNDGGLSNNRIVNGDLENRAGTGESSEALQFTDESNSKERVINDPIQNQGVVNDEIQTEIGSASVDPRLAGGGDCLDPGEVNSCSIEPECHHHVVDHTQDETELHKGNTQDDDYSKTCKIMRRSSIEQCLHISPVTMKRSFSWNGRILSTKGYMSLNSTLPY. 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01868 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 202 IPR013083 -
Seca7g01868 396 MobiDBLite consensus disorder prediction 220 273 - -
Seca7g01868 396 MobiDBLite consensus disorder prediction 220 266 - -
Seca7g01868 396 Pfam Ring finger domain 152 195 IPR001841 -
Seca7g01868 396 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 52 202 IPR044675 -
Seca7g01868 396 SMART ring_2 153 194 IPR001841 -
Seca7g01868 396 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Seca7g01868 396 FunFam RING-H2 finger protein ATL54 128 201 - -
Seca7g01868 396 CDD RING-H2_EL5-like 152 195 - -
Seca7g01868 396 SUPERFAMILY RING/U-box 143 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01868 Seca-Chr7 39233512 39234702 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01868 5 206 C3H Transcription Factor Family AT1G72220 49.573 1.78e-65 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01868 - - aprc:113847030 546.969