Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01867 ATGGCCCTAGAGGCTGTGGTTTTCCCACAAGATCCATTCTCTTATGGATGCAAAGATTACTTGTACTCTTTAGTTGGAGCTGCAAGTGAAGCAGCACCATGGAACCACAACTATGGTTCTCAACCACCAGAAGAGAAAGCACTACTTGGAATCATCAACAATAACATAGAGCAAAATCTCCATGCAAATTGGGATTCTTCTTCTCCTAATTCTGCTGTGTTACAAAATGTCAAGGACCAATGGGATTCTCACTCTCACTCACACTCACACTCTTCCCCTGAAACCTGCACCGTTGATGGAACTTTCACTCTTCCTCCTTCCTCTGTTGAAGCCAAAACCACTGTCACAGGTAGGCGTAAACGACGTCGTACCAAGAGCGCTAAAAATGAAGAGGAAATCGAGAACCAAAGGATGACCCACATTGCTGTTGAGCGCAATCGAAGAAAACAGATGAATGAGTACCTCGCTGTTCTCAGATCTTTGATGCCTCCTTCTTATGTACAAAGGGGTGATCAAGCGTCTATTATTGGAGGAGCGATTAACTTTGTGAAGGAACTGGAGCAGCTACTACAGTGCATGAAGGGGAAAAAGAAAACAAAGGAACAAGGAAATAATGATGAGAATGGTTCATCATCGTCATCACCTTTTGCTGAGTTCTTCATGTTCCCTCAATACTCAACGCGTGCGACTCAGAGCAGTAGCAGCAGCACGTGCTACCCTGGCACGAGTGAAGCGACGATGGCACAGAACCAGAATCAGTCACGTGCCGTGGCAGATATAGAAGTGACCCTTGTGGATAGTCATGCCAACATAAAGATACTCTCAAAGAAACGACCAGGGCACCTTATGAAGATGGTTGTTGGGTTACAGAGTCTTGGATTGAGCATTCTTCATCTCAATGTTACCACTGTGGATGATATGGTCCTTGCTTCAGTTAGTGTAAAGGTAGAGGAAGGGTGTCAGCTGAACACGGTGGATGAAATTGCAGCTGCTGTGAATCAACTATCACGCACAGTTCAAGAAGAAGCTGTTGCTATTTTCAGCTGA 1047 0.4499 MALEAVVFPQDPFSYGCKDYLYSLVGAASEAAPWNHNYGSQPPEEKALLGIINNNIEQNLHANWDSSSPNSAVLQNVKDQWDSHSHSHSHSSPETCTVDGTFTLPPSSVEAKTTVTGRRKRRRTKSAKNEEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKGKKKTKEQGNNDENGSSSSSPFAEFFMFPQYSTRATQSSSSSTCYPGTSEATMAQNQNQSRAVADIEVTLVDSHANIKILSKKRPGHLMKMVVGLQSLGLSILHLNVTTVDDMVLASVSVKVEEGCQLNTVDEIAAAVNQLSRTVQEEAVAIFS. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01867 348 MobiDBLite consensus disorder prediction 79 132 - -
Seca7g01867 348 MobiDBLite consensus disorder prediction 90 113 - -
Seca7g01867 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 186 IPR011598 GO:0046983
Seca7g01867 348 CDD bHLH_AtFAMA_like 138 207 - -
Seca7g01867 348 SMART finulus 141 192 IPR011598 GO:0046983
Seca7g01867 348 PANTHER MAX DIMERIZATION, MAD 75 342 - -
Seca7g01867 348 Gene3D - 119 204 IPR036638 GO:0046983
Seca7g01867 348 FunFam Basic helix-loop-helix transcription factor 126 201 - -
Seca7g01867 348 MobiDBLite consensus disorder prediction 197 216 - -
Seca7g01867 348 Pfam Helix-loop-helix DNA-binding domain 136 187 IPR011598 GO:0046983
Seca7g01867 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 200 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01867 Seca-Chr7 39163937 39167148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01867 1 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.840 2.35e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g01867 HLH 7.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01867 - - gmx:100803240 454.136