Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01866 ATGCAAAAGGAGAGTCCTCCTAGACTCCGTCGTTTTGGTCATAGCCATGTGTGGCTTGCTTTGTTACTTGTTTTTCTCATGCAGATCTCACCGCCAACAACCGCTCAACCGGTAGCACCGGAAGTGGACCCGGAGAATAATAAATCCGTGGCTACCATCATGGGGATCGTCGCTCTTATGTTCCTTGTCTCAGGTTTTCTTTCCCTCTACTCCGGCAAATGCACGGAACGGCAAGGAGTGAGGCTAGACCTCACTTTTCCCAACGCAGCCGATCGCCGTCAACAAAACGAACCATGCGTTGGTCTCAACCAAGAAGTCATCGACACATTCCCAACATTCCTCTACTCCAACGTGAAGGGACTCAAGATCGGCAAAGGCACATTAGCATGCGCGGTTTGCTTGAACGAGTTCGAAGACGACGAGACACTTCGCATGATCCCCAAATGCAGCCACGTGTACCACCCTAACTGCATCGATTCATGGCTAGCCTCTCACATCACCTGCCCACTCTGCCGCGCAAATCTTATCCCAAGACCCGACGACACCACCACCACCCTCCCTCCAACCACCGTCTCCATTCAAATGCCAGAAGATCACGAATTACAGTTACACCACCCAAACGAACAAGCACCAGAACAAGAAGAAGATGATGCTATTCGTGACAATACAGTACATGACCACAAGCGAGAAGATGACGTGGAATCAGTATCACCACCGAAGTTTGATTTTCTTCGTCGGTGTCGCACCATGAATTTCCAGAACCGTCCTCCAACACGGTCGAGATCTACTGGTTTTTTGTCTTCTCTGTGGTTTTCGAGGTCAAATTCAATGGCTGATAATCATCATCCGTCGGTGTTGGTGCAGCAAGGTGAGAATTGTGAGAGGTTTACTCTGAGGTTACCTGATGAGGTTCGAAGCCAGATGCTGAAGCGTGCGAATAGTTGCGTGAGTTTTGCGAGAATGAGTAGTGGCACGTGGGGTTATAGGACCAGAAGTGTAGGGAGTGGTGGACACGCGCGGGGTGGTGGTTGTGTGCAGTATGAGAGGTTTGGGAGTCATGAGGAGCAGTGGGGGTTCAGTTTGACGCCACCGGGTTTTGTTAGAAACGGTTGGAATAGGTCTTCTAGAAAAAGCTCTGATCATTTGGGAGTGGCTTTGGATAATAATGCTGGTGAGCGATCCTCTGATCATTTATGTCCTGGTTAA 1206 0.4967 MQKESPPRLRRFGHSHVWLALLLVFLMQISPPTTAQPVAPEVDPENNKSVATIMGIVALMFLVSGFLSLYSGKCTERQGVRLDLTFPNAADRRQQNEPCVGLNQEVIDTFPTFLYSNVKGLKIGKGTLACAVCLNEFEDDETLRMIPKCSHVYHPNCIDSWLASHITCPLCRANLIPRPDDTTTTLPPTTVSIQMPEDHELQLHHPNEQAPEQEEDDAIRDNTVHDHKREDDVESVSPPKFDFLRRCRTMNFQNRPPTRSRSTGFLSSLWFSRSNSMADNHHPSVLVQQGENCERFTLRLPDEVRSQMLKRANSCVSFARMSSGTWGYRTRSVGSGGHARGGGCVQYERFGSHEEQWGFSLTPPGFVRNGWNRSSRKSSDHLGVALDNNAGERSSDHLCPG. 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01866 401 PANTHER RING FINGER DOMAIN-CONTAINING 38 182 - -
Seca7g01866 401 CDD RING-H2_EL5-like 130 172 - -
Seca7g01866 401 Pfam Ring finger domain 129 172 IPR001841 -
Seca7g01866 401 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Seca7g01866 401 SMART ring_2 130 171 IPR001841 -
Seca7g01866 401 SUPERFAMILY RING/U-box 124 179 - -
Seca7g01866 401 MobiDBLite consensus disorder prediction 382 401 - -
Seca7g01866 401 FunFam E3 ubiquitin-protein ligase ATL6 89 178 - -
Seca7g01866 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 177 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01866 Seca-Chr7 38970819 38973652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01866 9 379 Rapid Response to Elicitors AT3G05200 33.165 1.86e-46 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01866 K10664 - gmx:100814384 408.297