Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01865 ATGGGCATCCACACCGTGTGTCCTGCACCTGCACCATTTGAAAACGCGATGCCTCCGCCGCCGCCAGACCCATTCGCGAGGCTGAGGTTCGACAAGACCATGGCTGCGGTTCTTGTGATCCTCGTCGTGGTTTTCTTCTTATTGGGCTTTGTCTCTATCTACACTCGCCAATGTGCGGAGCGAAGGATCAGAGGGAGGCTCGACATCGCCGTCAACATCGTCGGCGGCAGCAGTCTCCGGCAGAATCGCGGCCTCGACCCGGCGATCATCGACACGTTCCCGACTTTCGTTTACTCTGACGTGAAGGGACTCAAGATAGGGAGGGCCACGCTAGAATGCGCCGTGTGCCTCAACGAGTTTCGCGATGATGAAACGGTGCGTTTGATCCCCAAATGTAGCCACGTGTTCCACCCTGATTGCATTGATGTCTGGTTGGTTAATCACTCCACTTGCCCCGTTTGCAGGGCAAACCTCGTGCCTAAACCAGGTGACACGTCACCATCTTCTTCTGTCGCGAACCAAATCCCGGATCCGGGTTGTGGAAGACCCGTTTCACCAGAACAAACGCCCGATGTCATTATCCGGGTAGATGCTGATGAAGGTAGGAGAATAACAACGGAGTCTCCCAGGGTGAATTTAGATGAACCAAACCGTCCGGTTCGGTCGAGGTCAACCGGGTTTGGGTTCTCTAGATTGTTCCCGCGCTCTCACTCGACCGGTCACTCACTGGTTCGACCGGGCGAGGATTGCGAGCGGTTCACGTTGAGGTTACCGAAGGAAGTGCGGGATCAGCTTGTGAATTCAGCGACATTGAGCCAAACGAAGAGTTGCGGCATGACATTGCATAGAGAGAGCAGTGGGAGGAGGGGTTACAGGACGAGGAGTGTGGGGAGAAGTTATCTACAGTACGAGCGGTTTGAAGGAGAGGGCCGGTCGGACCGGTGGGGATTCAAGTGTACCCCGCCGTTTTTGGGCCGGTCCGGTTCGAGCAGATCTACTAAGGACGCCAACAAGGTATCGGTGGTGATGGATGAGGTCGAAGTGGGAGAACGTTCTTGTGATCGTTTATTTACCAATGGTTGA 1083 0.5503 MGIHTVCPAPAPFENAMPPPPPDPFARLRFDKTMAAVLVILVVVFFLLGFVSIYTRQCAERRIRGRLDIAVNIVGGSSLRQNRGLDPAIIDTFPTFVYSDVKGLKIGRATLECAVCLNEFRDDETVRLIPKCSHVFHPDCIDVWLVNHSTCPVCRANLVPKPGDTSPSSSVANQIPDPGCGRPVSPEQTPDVIIRVDADEGRRITTESPRVNLDEPNRPVRSRSTGFGFSRLFPRSHSTGHSLVRPGEDCERFTLRLPKEVRDQLVNSATLSQTKSCGMTLHRESSGRRGYRTRSVGRSYLQYERFEGEGRSDRWGFKCTPPFLGRSGSSRSTKDANKVSVVMDEVEVGERSCDRLFTNG. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01865 360 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Seca7g01865 360 CDD RING-H2_EL5-like 112 155 - -
Seca7g01865 360 PANTHER RING FINGER DOMAIN-CONTAINING 14 165 - -
Seca7g01865 360 SMART ring_2 113 154 IPR001841 -
Seca7g01865 360 FunFam E3 ubiquitin-protein ligase ATL6 75 161 - -
Seca7g01865 360 MobiDBLite consensus disorder prediction 162 188 - -
Seca7g01865 360 Pfam Ring finger domain 112 155 IPR001841 -
Seca7g01865 360 SUPERFAMILY RING/U-box 96 169 - -
Seca7g01865 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 160 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01865 Seca-Chr7 38842072 38844067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01865 15 351 Rapid Response to Elicitors AT3G05200 40.166 4.86e-72 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01865 K10664 - gmx:100807828 441.425