Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01833 ATGCTGATTCTTCTTGCCAGGAGATTTAAGGGAAAGAGAGTAGTGTTTCTGAAGCAACTTCCTTCTGGGTTGCTCCTTGTAACTGGTCCCTTCAAGATCAATGAAGTTCCTTTGAGACGTGTGAATCAGTTATATGTTATTGCCACGTCCACCAAAGTAGATTTGTCTGCAGTTAATGTGGATAAATTTGATGAGAAGTACTTCTCAAAGGAAGTTCAGAAAAAGAAAAAGAAGGGAGAAAGCAAGTTCTTTGAGGCAGAGAAGGAGGGTAGTTTCTCCAATTTTCTTGTGTTTTGTTAA 300 0.39 MLILLARRFKGKRVVFLKQLPSGLLLVTGPFKINEVPLRRVNQLYVIATSTKVDLSAVNVDKFDEKYFSKEVQKKKKKGESKFFEAEKEGSFSNFLVFC. 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01833 99 PANTHER 60S RIBOSOMAL PROTEIN L6 2 89 IPR000915 GO:0003735|GO:0005840|GO:0006412
Seca7g01833 99 FunFam 60S ribosomal protein L6 1 78 - -
Seca7g01833 99 CDD KOW_RPL6 2 89 IPR041997 -
Seca7g01833 99 ProSitePatterns Ribosomal protein L6e signature. 34 52 IPR000915 GO:0003735|GO:0005840|GO:0006412
Seca7g01833 99 Pfam Ribosomal protein L6e 33 89 IPR000915 GO:0003735|GO:0005840|GO:0006412
Seca7g01833 99 Gene3D - 1 83 IPR014722 -
Seca7g01833 99 SUPERFAMILY Translation proteins SH3-like domain 2 84 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01833 Seca-Chr7 37374973 37375755 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01833 1 70 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 81.429 8.01e-35 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01833 K02934 - mof:131167675 119.783