Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01825 ATGGAATTTGACGAGCAAGAAGAACAAGAGGAGGAAATGGGGATCCCGGAGACACCGCAACCGCCACCAGCGAGTTACGACTCGCTCGGAAACTCGGCGACCAGGTCCAAACTCACTGAGGCAACCGCGTCACGGAAGAGCGCGTTCGGGACGGTGAGGTATAGAGAATGTCAAAAGAATCACGCCGTAAGCTTCGGCGGCCACGCCGTCGACGGTTGCTGCGAGTTCATGGCTGCCGGAGAGGAAGGAACTCTAGAGGCCGTGATTTGCGCTGCCTGTAACTGTCACCGGAACTTCCACCGTAAGGAGATCGACGGCGAGACAGTGAGCTCTTGCCAGCGTCCACCGCAGCAACCGCCTCCTCCGCCGCAGATGTACCATCACCACCACCAATTCTCACCTTACTACCACCGCGGACCTCAGCACCACCCTGCCGCTGGCGCCGTTGCTCTTCCTGCCGCCGTTTCCGGCGGCAGACTCAGCAGAGAAGAAGAAGACATGTCGAATCCGAGCAGCAGCGGCGGAGGCGGCGGTGGCGGAGCCACCGGAACGAAGAAGAGGTTCAGAACGAAGTTCACACAGGAACAAAAAGACAAGATGCTAGCGTTTGCTGAAGAACTTGGATGGAGAATCCAGAAGCAGAACGAAGCAGCTGTGGAACAATTCTGTGCTGAGAATTGTGTGAAGAGAAACGTTCTCAAGGTTTGGATGCACAATAACAAGAACACTCTTGGTAAGAAACCCTAA 747 0.5596 MEFDEQEEQEEEMGIPETPQPPPASYDSLGNSATRSKLTEATASRKSAFGTVRYRECQKNHAVSFGGHAVDGCCEFMAAGEEGTLEAVICAACNCHRNFHRKEIDGETVSSCQRPPQQPPPPPQMYHHHHQFSPYYHRGPQHHPAAGAVALPAAVSGGRLSREEEDMSNPSSSGGGGGGGATGTKKRFRTKFTQEQKDKMLAFAEELGWRIQKQNEAAVEQFCAENCVKRNVLKVWMHNNKNTLGKKP. 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01825 248 MobiDBLite consensus disorder prediction 107 144 - -
Seca7g01825 248 Pfam ZF-HD protein dimerisation region 52 104 IPR006456 -
Seca7g01825 248 MobiDBLite consensus disorder prediction 1 45 - -
Seca7g01825 248 Gene3D - 170 245 - -
Seca7g01825 248 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 24 244 - -
Seca7g01825 248 MobiDBLite consensus disorder prediction 158 185 - -
Seca7g01825 248 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 53 104 IPR006456 -
Seca7g01825 248 MobiDBLite consensus disorder prediction 24 45 - -
Seca7g01825 248 FunFam Zinc-finger homeodomain protein 2 178 246 - -
Seca7g01825 248 NCBIfam homeobox domain, ZF-HD class 185 242 IPR006455 -
Seca7g01825 248 SUPERFAMILY Homeodomain-like 171 246 IPR009057 -
Seca7g01825 248 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 103 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01825 Seca-Chr7 37194078 37194875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01825 1 244 ZF-HD Transcription Factor Family AT4G24660 50.607 6.87e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca7g01825 ZF-HD_dimer 2.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01825 - - gmx:100776421 314.694