Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01796 ATGTTCTCCAAGCTTCACCAACAACATCAACAACTCTTCCAACCCTCCCGAGAATGCCAAACTTCCGAAGATGATGACAGCCGAAGCAGCGGTGGGCCTAACCCTGCCACCGCCCAAAGGCCCGCATCTGGTGGCGACGGGGCAACCATTGAGGTAGTGCGTCGGCCCAGAGGCCGCCCACCTGGCTCCAAGAACAAGCCCAAACCGCCACTTATCATAACCCGCGAGCCCGAGCCCGCCATGAGCCCACACATTCTTGAAGTTCCAGGAGGAAGCGATGTGGTTGAATCCATAGCCCGGTTCAGCCACCGCAAGAACACGGGCCTCTGTGTCCTAACCGGTTCAGGAACCGTCGCTAACGTCACCCTCCGTCAACCCTCCGCCACTCCCGGCGCCACCGTCACCTTCCATGGCCGTTTCGACATCCTCTCTATATCCGCCACCTTCCTCCCTCATCCGCCGGGAACCTCGCCGCTGGTCCCCAACTGCTTCACCATCTCCCTCGCCGGACCTCAGGGCCAGATCATCGGAGGACTCGTCGTCGGCCGGTTGCTCGCTGCCGGAACCGTCTTCGTCATAGCCGCTTCATTCAACAATCCTTCATATCACAGGCTTCCGTCGGAGGAGGATGTGCGGAACAGCGCCGGCGGCGAGGTGCAATCGCCGCCAATATCCGGTGGCGGTTCAGAGAGTGGGCATGTCCCGGTAGAATCGTGTATGTACAGCTGTCACCTTCCTTCAGATGTGATTTGGGCTCCAACTGCAAGACCACCACCACCACCTTTCTGA 789 0.597 MFSKLHQQHQQLFQPSRECQTSEDDDSRSSGGPNPATAQRPASGGDGATIEVVRRPRGRPPGSKNKPKPPLIITREPEPAMSPHILEVPGGSDVVESIARFSHRKNTGLCVLTGSGTVANVTLRQPSATPGATVTFHGRFDILSISATFLPHPPGTSPLVPNCFTISLAGPQGQIIGGLVVGRLLAAGTVFVIAASFNNPSYHRLPSEEDVRNSAGGEVQSPPISGGGSESGHVPVESCMYSCHLPSDVIWAPTARPPPPPF. 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01796 262 CDD DUF296 83 197 IPR005175 -
Seca7g01796 262 Gene3D - 82 214 - -
Seca7g01796 262 MobiDBLite consensus disorder prediction 1 80 - -
Seca7g01796 262 PIRSF ESCAROLA 1 250 IPR014476 GO:0003680
Seca7g01796 262 ProSiteProfiles PPC domain profile profile. 78 218 IPR005175 -
Seca7g01796 262 FunFam AT-hook motif nuclear-localized protein 82 216 - -
Seca7g01796 262 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 22 222 IPR014476 GO:0003680
Seca7g01796 262 MobiDBLite consensus disorder prediction 1 18 - -
Seca7g01796 262 Pfam Plants and Prokaryotes Conserved (PCC) domain 83 199 IPR005175 -
Seca7g01796 262 MobiDBLite consensus disorder prediction 204 231 - -
Seca7g01796 262 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01796 Seca-Chr7 36073971 36074759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01796 46 260 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 69.298 1.36e-101 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01796 - - gmx:100811053 351.288