Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01775 ATGGCGAGGCAGAAGATAAAGATCAAGAAAATTGACAACGCAACGGCGAGGCAAGTGACGTTTTCAAAGAGGAGGAGAGGGATCTTCAAGAAAGCTGAAGAGCTTTCTGTGCTGTGTGATGCTGAGGTTGGTCTTGTTATTTTCTCAGCTACTGGGAAGCTTTATGAATATGCTAGTTCCAGGTATGGTGTATATATATAA 201 0.4229 MARQKIKIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDAEVGLVIFSATGKLYEYASSRYGVYI. 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01775 66 CDD MADS_MEF2_like 2 60 IPR033896 GO:0000977|GO:0045944
Seca7g01775 66 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca7g01775 66 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 60 - -
Seca7g01775 66 SUPERFAMILY SRF-like 1 61 IPR036879 GO:0003677|GO:0046983
Seca7g01775 66 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca7g01775 66 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca7g01775 66 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca7g01775 66 Gene3D - 13 65 IPR036879 GO:0003677|GO:0046983
Seca7g01775 66 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca7g01775 66 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca7g01775 66 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01775 Seca-Chr7 35682843 35683043 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01775 1 61 MADS-box Gene Family AT4G24540 83.607 9.14e-30 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca7g01775 SRF-TF 5.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01775 - - mnt:21391903 109.383