Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01769 ATGGGTGGTGCAGCTTCTTTCAAACCATTCACCGTCACATTCCCCATCATCGTCACCACACTCATTCTAATTAGTCCCCGGAATATTATGGCCGCAAGACCCGACGACGAAGATTCAAAAGAAAACACGATTCCCTCTCTCGAAGACTTCAGCACGTCACCGCCGGCGGCGTCACCCGTCGGCAATTCCGGTCACAAAGAGAGGAAATCGAACGCATTAAAGCCGAACGCCGCAGTGGTGGTGGGCGTTTTGACCATCACGTTTTGCCTCATTTTCCTCCTCCTCCTCTATATCAAGCACTGCAAAAGCGGGAGCACGTTCAATACCGGCAATGCGAATCAACGTTCCGACGAGAAAAAGAACTCCGGCGTTGACCGCGCGGTGGTGGAAGGGTTGCCGATTTTCCGATTCGGTTCGCTGAGGGGACAGAAAAACGGTCTCGAATGCGCGGTTTGTCTCACCGGGTTTGAGGACCACGAAGTTCTGAGGCTGTTACCGAAATGCAAGCACGCGTTCCACGTGGAATGTGTTGACACGTGGCTCGACGTGCATTCCACGTGTCCTCTTTGTCGCGACAAGGTCGACCCTGAAGACTTTGTTCTGGTGGTGGAGCCGCGCCAAAACGCGAATGAAGAAGAAGCGCCGGAAAGTGGAAACAATAATAATAACGACAACGACGCACCGCAACCGGAAAATCTAGGGTCCCGGCGAGTCTCTGAAAGGCACTCGTCGGTGGGAGAGAGGGACGAGGAGTTTTTACAGATTGTGCTGGAGGAGAGGCAGGAACAGAATACGGAAACGAGGCATTTGGATAGTGCCACGGGGGAAATGAAAAGCGAGTGGCAGAAGATGGAAACGACGTCGTTGAGGCGAGACAGGGAGAGGACGAATATTGCGGAGCGGCACAGGTTAGAGCACCGTATCATTATCTCCCATTCTTTCTCACGAGGTGGGGTCCACGAGCGGTGGAGCGATGTTCAGCCGTCTGATTTGTTGTATTTAACCTCCGAGAAGATCATCAGCGATTCTTCCTCTTACTCGCGCAGAGGAAGAAGAACGGTGCGGGAGCAGAGACACAACGTTGATGATGAAATAGAGAATGGTTTTGGTGTTTGTGGTGGTGGTGGGAGTGGAGTGATGAAGAATTTGAGGAGTGTATCGGAGATGACGGGAATGAGCAGGTTTTTAAGGGGTACAAAGAGGGAGAGAGGGAGGGAAGGAGAGAGAGGTTATCGAGAAGAACAAGAGCAGCAACGTGAGGGAGCTGTTTCGAGGTGGTTGGGTTCGGTTTCCAGGTCACAAACACGACGAGGAGATGTGTCTTAG 1326 0.5234 MGGAASFKPFTVTFPIIVTTLILISPRNIMAARPDDEDSKENTIPSLEDFSTSPPAASPVGNSGHKERKSNALKPNAAVVVGVLTITFCLIFLLLLYIKHCKSGSTFNTGNANQRSDEKKNSGVDRAVVEGLPIFRFGSLRGQKNGLECAVCLTGFEDHEVLRLLPKCKHAFHVECVDTWLDVHSTCPLCRDKVDPEDFVLVVEPRQNANEEEAPESGNNNNNDNDAPQPENLGSRRVSERHSSVGERDEEFLQIVLEERQEQNTETRHLDSATGEMKSEWQKMETTSLRRDRERTNIAERHRLEHRIIISHSFSRGGVHERWSDVQPSDLLYLTSEKIISDSSSYSRRGRRTVREQRHNVDDEIENGFGVCGGGGSGVMKNLRSVSEMTGMSRFLRGTKRERGREGERGYREEQEQQREGAVSRWLGSVSRSQTRRGDVS. 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01769 441 SMART ring_2 149 190 IPR001841 -
Seca7g01769 441 MobiDBLite consensus disorder prediction 45 59 - -
Seca7g01769 441 MobiDBLite consensus disorder prediction 33 69 - -
Seca7g01769 441 MobiDBLite consensus disorder prediction 208 292 - -
Seca7g01769 441 MobiDBLite consensus disorder prediction 212 232 - -
Seca7g01769 441 SUPERFAMILY RING/U-box 144 196 - -
Seca7g01769 441 Pfam Ring finger domain 148 191 IPR001841 -
Seca7g01769 441 CDD RING-H2_EL5-like 148 191 - -
Seca7g01769 441 MobiDBLite consensus disorder prediction 397 441 - -
Seca7g01769 441 MobiDBLite consensus disorder prediction 235 292 - -
Seca7g01769 441 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Seca7g01769 441 FunFam RING-H2 finger protein ATL43 124 198 - -
Seca7g01769 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 198 IPR013083 -
Seca7g01769 441 MobiDBLite consensus disorder prediction 397 420 - -
Seca7g01769 441 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 58 432 - -
Seca7g01769 441 MobiDBLite consensus disorder prediction 422 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01769 Seca-Chr7 35547489 35548895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01769 70 435 C3H Transcription Factor Family AT5G05810 41.457 5.82e-67 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01769 K19041 - mtr:11437137 306.605