Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01733 ATGTCCTCACAAGCAGTGCAGTTGCGCATCTCAGACAGTCATGTGGTTATGGACAATGGCATACTGCAAGTGTATTTATCCAATCCAGGTGGATTTGTCACTAGAATACAATATAATGCCATTGATAATTTGCTTGAAGCTCTTAATGAAAAGAATAATAGAGGGTATTGGGATGTTGTTTGGAGTGAAGCAGGAAGTACAGGAACAACCGGGACATCTGAGCGGATTGTGGGAACAAGTTTTAAAGTTATAATACAAAATGAGGAACAGGTTGAAATCTCATTTACAAGAATGTGGGATCCATCTCTAAAGGGAAAGCAATCACCTCTAAATTTTGACAAGAGGTATGTGATGCTTCGTAATTCCTCAGGCTTCTACTCTTATGCCATCTTTGAACACCTAAAGGAATGGCCTCCTTTTAACATACCTCAAACGAGAATTGTTTATAAGCTTCGAAAAGACAAGTTTCATTACATGGCTGTGGCAGATGATAGACAAAGATTTATGCCTCTCCCTGACGATAGATTACCAGGAAGAGGAGTAGAACTAGTTCCCCCAGAAGCAGTTTTGCTCGTCCATCCCGTGGAGCCAGAGTTCACGGGAGAGGTGGATGACAAATATCAATATTCATGTAACAACGAAGATCTTAAGGTTCATGGATGGATAAGTTCAGAATCCAAAACTGATCCACCTATGGGATTCTGGGTAATCATACCCAGCAATGAGTTCAGATCAGGTGGCCTTGTTAAACAGAACCTTACTTCCCATGTAGGCCCCATCAGCCTCGCAATGTTTCTTAGTGCTCATTACGCAGGAGAGGATATAGTCCTTAAACTCCAGCCAAATGAGCCATGGAAGAAAGTTTTTGGACCAACTTTTGTCTATCTTAACACTTTATTGGATGGTGAAGACCCACTAGAGCTATGGGAGGATGCCAAAAATCAGATGAACAAGGAAGTTCAAAGTTGGCCCTATGATTTTCCAGCTTCAGAGGATTTTCAAAAGTCTAACCAACGGGGCAGTGTGTGTGGCACGTTGCTAGTTCGAGACAGGTGCCTAAGTGATGAGGACATATTAGCACAAGATGCATACATAGGTCTGGCACCACCTGGAGACTCTGGATCCTGGCAAAGAGAATGCAAGGGATACCAATTCTGGACTAGAGCAAATGAGGAAGGCTATTTCTCAATCAATAATATATGTAGTGGGGATTACAATCTCTACGCATCGGTTCCAGGTTTCATTGGAGAATATTGGAACAATGTTGTCATCACCATAACCCCAGGTTGTGAAATAAATGTTGGTGACATTATTTATGAGCCGCCAAGAGATGGTCCAACATTATGGGAGATTGGAATACCTGATCGCTCTGCTGCTGAGTTCTATGTTCCTGATCCTAATCCAAAGTACATAAACAAGCTTTATGTTGACCATCCAGACAAGTTTAGGCAGTATGGCTTGTGGGAAAGATATGCAGATTTATACCCAAATGAAGATTTGATATATACAGTTGGTGTCAGTGACTACAGAAAAGATTGGTTCTTTGCACAAGTCACAAGGAAGAAAAACGATGGCAGTTACCAAGGAACTACATGGCAAATTAAGTTCAACCTTGATGAGGTGGAGGCAAGTGGAATCTATAAATTGCGTTTGGCTCTTGCAAGTGCAAATGTCTCTGAATTACAGGTTTGGAACTGTCATGAAACCAACTATCTTAAAAGTTCAAGTTTTTGGGTAAAGATTCATTAA 1749 0.4117 MSSQAVQLRISDSHVVMDNGILQVYLSNPGGFVTRIQYNAIDNLLEALNEKNNRGYWDVVWSEAGSTGTTGTSERIVGTSFKVIIQNEEQVEISFTRMWDPSLKGKQSPLNFDKRYVMLRNSSGFYSYAIFEHLKEWPPFNIPQTRIVYKLRKDKFHYMAVADDRQRFMPLPDDRLPGRGVELVPPEAVLLVHPVEPEFTGEVDDKYQYSCNNEDLKVHGWISSESKTDPPMGFWVIIPSNEFRSGGLVKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNTLLDGEDPLELWEDAKNQMNKEVQSWPYDFPASEDFQKSNQRGSVCGTLLVRDRCLSDEDILAQDAYIGLAPPGDSGSWQRECKGYQFWTRANEEGYFSINNICSGDYNLYASVPGFIGEYWNNVVITITPGCEINVGDIIYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVDHPDKFRQYGLWERYADLYPNEDLIYTVGVSDYRKDWFFAQVTRKKNDGSYQGTTWQIKFNLDEVEASGIYKLRLALASANVSELQVWNCHETNYLKSSSFWVKIH. 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01733 582 CDD RGL4_M 338 437 IPR029413 -
Seca7g01733 582 Gene3D - 5 278 IPR014718 GO:0030246
Seca7g01733 582 SUPERFAMILY Starch-binding domain-like 376 435 IPR013784 GO:0030246
Seca7g01733 582 Gene3D - 445 567 - -
Seca7g01733 582 FunFam Rhamnogalacturonate lyase B 335 434 - -
Seca7g01733 582 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 564 - -
Seca7g01733 582 Pfam Polysaccharide lyase family 4, domain III 447 564 IPR029411 -
Seca7g01733 582 SUPERFAMILY Galactose-binding domain-like 444 564 IPR008979 -
Seca7g01733 582 CDD RGL4_N 8 298 - -
Seca7g01733 582 Gene3D - 335 434 - -
Seca7g01733 582 Pfam Rhamnogalacturonate lyase family 4 203 IPR010325 -
Seca7g01733 582 Pfam Polysaccharide lyase family 4, domain II 362 433 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01733 Seca-Chr7 34643526 34649840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01733 1 563 Polysaccharide Lyase AT1G09890 64.716 0.0 760
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01733 K18195 - gmx:100815677 1015.76