Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01720 ATGGGGAGAGGAAAGATCGTGATAAGGAGGATCGACAATTCGACGAGCAGGCAAGTGACGTTCTCGAAACGAAGGAACGGTTTGCTGAAGAAGGCGAAGGAACTCGCAATCTTGTGCGATGCTGAGGTAGGAGTTATGATCTTCTCAAGCACTGGCAAACTCTATGATTTCTCCAGTACCAGCATGAAATCAGTAATTGATCGATACAACAAATCAAAAGAAGAACATAATCAACTTGGGAGTTCAACCTCTGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAACTGCACAGTTTGCAAGAAAGTCACCGGCAAATAATGGGGGAAGAACTATCAGGTTTGACAGTCAAAGAATTACAGAGTTTGGAGAACCAACTAGAAATTAGCCTTCGTGGTGTCCGTATGAAAAAGGACCAACTTTTAATTAATGAAATACAAGAACTAAATCGAAAGGGAAGCCTCATACACCAAGAAAATGTGGAACTGTATAAGAAGGTAAACACAATTTGTCAAGAAAATATGGAATTGAAAACTAAGGTATTAGATTGA 561 0.3993 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFSSTSMKSVIDRYNKSKEEHNQLGSSTSEIKFWQREAAMLRQQLHSLQESHRQIMGEELSGLTVKELQSLENQLEISLRGVRMKKDQLLINEIQELNRKGSLIHQENVELYKKVNTICQENMELKTKVLD. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01720 186 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Seca7g01720 186 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca7g01720 186 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca7g01720 186 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Seca7g01720 186 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca7g01720 186 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca7g01720 186 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca7g01720 186 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca7g01720 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca7g01720 186 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Seca7g01720 186 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Seca7g01720 186 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 154 - -
Seca7g01720 186 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca7g01720 186 Coils Coil 86 106 - -
Seca7g01720 186 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01720 Seca-Chr7 33503411 33519965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01720 1 170 MADS-box Gene Family AT4G37940 75.294 9.01e-91 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca7g01720 K-box 2.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01720 K09264 - gmx:100812413 325.479