Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01698 ATGGAGTTATATGATCATGATTTCTTGGAGGAATTGCTTGCTCTAAGAACAAAACCACATTTAGAAGAAAACCAACTCTTGAGTACTAATTATGGTTGGAGTTTTGATTGTTTTGATCAAAACTCTTCTTCTTTTCTTCCAAATGCTTCTTCCACTTACCAAGAAGTTCCTCAAAATTACACTTTCAATGAAATCTACAGTTCATTACTTGATGAATTCTCTACACCCCAGATCATTGATTCATCATCCTATAACACCACCACTACCCTTGATACTCCACTTAACACACCTCCATTTCTGGCTCAAGAAGATTATCCATTGTCTGTGATGGAAGATGAGGATCCTGGTCTACTTGGGGATGAGCTTCATAGTTTGGACCTTCAAACCACATGCAAAATGGAGCCAAGCTTATCCCCTGAAGAAATGCCTGTTTTCAGCCAAGGTACATGTTTGGAAAGAAAGAATAGAGCAAAGAAGCTTCAGGGTCAGCCTTCAAAGAATCTAATGGCAGAGAGGAGAAGAAGAAAGAGATTAAATGATAGGCTCTCTATGCTAAGATCAATTGTCCCTAAGATAAGTAAGATGGACAGAACATCTATTCTTGGAGACACTATTGATTACATGAAAGAACTTTTGGAGAAGATTAATAATTTGAAACAAGAAATAGAAGTAGATTCAAGTATGGCTAGCATTTTCAAGGATGTGAAGCCCAATGAAATCTTAGTGAGAAATTCTCCCAAGTTTGATGTGGATAGGAAGAATGTGAACACAAGGGTTGAGATCTGCTGTGCAGGGAAGTCAGGGTTGTTGCTATCTACAGTGAACACCTTGGAAGCATTAGGCCTTGAGATCCAACAATGTGTTATTAGCTGTTTCAATGATTTCACAATGCAAGCTTCTTGTTCAGAGGTATAG 915 0.3814 MELYDHDFLEELLALRTKPHLEENQLLSTNYGWSFDCFDQNSSSFLPNASSTYQEVPQNYTFNEIYSSLLDEFSTPQIIDSSSYNTTTTLDTPLNTPPFLAQEDYPLSVMEDEDPGLLGDELHSLDLQTTCKMEPSLSPEEMPVFSQGTCLERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKINNLKQEIEVDSSMASIFKDVKPNEILVRNSPKFDVDRKNVNTRVEICCAGKSGLLLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEV. 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01698 304 Coils Coil 201 228 - -
Seca7g01698 304 SMART finulus 168 217 IPR011598 GO:0046983
Seca7g01698 304 Pfam Helix-loop-helix DNA-binding domain 168 211 IPR011598 GO:0046983
Seca7g01698 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Seca7g01698 304 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 68 303 - -
Seca7g01698 304 Gene3D - 170 244 IPR036638 GO:0046983
Seca7g01698 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 224 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01698 Seca-Chr7 33224109 33226196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01698 92 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 54.222 5.46e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g01698 HLH 6.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01698 - - gmx:100814388 462.225