Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01696 ATGGCTGGTGTCTGTGATCTTATTAAGTCATTTTCTCCTAGGAGGCAGAATTGTAGGATCAAGGTTAGAGTCATTCGTTTATGGGACATGGCACCCATTGATCAACCATCCAATCTATTCTCCATTGATATGGTGCCATTAGACTCGAATGGCGATAGAATTCAAGCCACCATACGGAAACCTATGATAAGAAAATTCAGGGGTGCAATTGTGGAGGGTCAGGTGTATCGTATGGCTTATTTTGGAATTGTCAACAACACAGGTTCTTTTCGTGCTGCGAGGCATGAATACAAGCTCCCCTTTCATGGAAGGACAAGGGTCATCCCATGCGAGGCGATGACAATTCCCATGTACAACATAGCCTGCACTGACTCTGAGCAGGTGTTAAACACTGAAGGGAAGTCTGACTATTTAGTTGATGTCATGGGTTTGTTGACTGCTGTTTCAACTAAAAAGTTATCCGCTCGAGATGGTCGAGCAACAAGACTGATTGTGATGGAATTAATTGACGAGAAGGGGAAGATGAGGTGCACTGTGTTTGGTCAGTATGTGGATGTCATAAATGATCACATATCAAGAGGTGGTGAAGGACTTCCTGTTGTGATTGCTCAGTTTGTGTGTGTTAAGACTTACAAAGGTGAAGTTGTGCTTCAAAATGTCATGAATACTACAAGGGTTCTCTGGAATCCTGACATACCCGAAGTTTGTGCCTTCAGAGACCGCATGGTTTCCTGTGGCGTGGATACAACCGTTCCAGTTGGTGTGATTGGCGATTCACGAATGGAGGTTGCACCACATGAAGAGTTCACTAATTTACACCCAATGAAGACAATAACTGAGCTCAATTCAACTGAAGAGGAGGGGTTTTTCATCGTTCTTGCAAGTATCACAGCTGTTCTTAGGCAAAATATGTGGTGGTACAATGCGTGTCGTTGCATGAAGGCAGTTACGGAGGTTGATGGTAATCCTTTCTGCCCTGCGTGTTGCACGAATGACCTACAAGTAAAACCTAGGTATAAGTTGAGGGTGGAAGTATTTGATGGGGGATGA 1050 0.44 MAGVCDLIKSFSPRRQNCRIKVRVIRLWDMAPIDQPSNLFSIDMVPLDSNGDRIQATIRKPMIRKFRGAIVEGQVYRMAYFGIVNNTGSFRAARHEYKLPFHGRTRVIPCEAMTIPMYNIACTDSEQVLNTEGKSDYLVDVMGLLTAVSTKKLSARDGRATRLIVMELIDEKGKMRCTVFGQYVDVINDHISRGGEGLPVVIAQFVCVKTYKGEVVLQNVMNTTRVLWNPDIPEVCAFRDRMVSCGVDTTVPVGVIGDSRMEVAPHEEFTNLHPMKTITELNSTEEEGFFIVLASITAVLRQNMWWYNACRCMKAVTEVDGNPFCPACCTNDLQVKPRYKLRVEVFDGG. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01696 349 Gene3D - 114 250 IPR012340 -
Seca7g01696 349 Gene3D - 7 112 IPR012340 -
Seca7g01696 349 SUPERFAMILY Nucleic acid-binding proteins 274 348 IPR012340 -
Seca7g01696 349 PANTHER OS03G0429900 PROTEIN 7 334 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca7g01696 349 CDD RPA1_DBD_A_like 19 107 - -
Seca7g01696 349 SUPERFAMILY Nucleic acid-binding proteins 7 111 IPR012340 -
Seca7g01696 349 Pfam Domain of unknown function DUF223 47 131 IPR003871 -
Seca7g01696 349 SUPERFAMILY Nucleic acid-binding proteins 132 242 IPR012340 -
Seca7g01696 349 CDD RPA1_DBD_B_like 140 242 - -
Seca7g01696 349 Gene3D - 262 349 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01696 Seca-Chr7 33175017 33177635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01696 10 348 Core DNA Replication Machinery Family AT5G08020 24.860 3.99e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01696 - - lja:Lj6g3v0884310.1 314.694