Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01689 ATGTCTCGGCCTCTGCTCGGGATAGGGGATGAGGAAGGTGAAAGCAATGTCACCTTGTTGGTTTCTTCCTCAGCCACTGTGGAAAGTGTGTGCTTGAATGGTTCAAAACTGAAAGAACGCAATTACATGGGGTTATCATCTGATTGTTCATCAGTGGACAGTTCAGTTCCACTTCCATCTTTCTCAGATGAGAGCAAAAGCAATCTGAACCTCAAAGCCACAGAACTCAGATTGGGGCTTCCAGGATCACAGTCTCCTGTAAGAGATTCAGATCTTTGCTTGAGAAGTTCAACTCAGTTTGATGAGAAGCCTTTGTTTCCTTTGCATCCAGTAACAGATGATCATCATTCCTCATCAAAGCCTGCTGTTTTGGGCAACAAAAGAGGGTTCTCAGATGCCATGAATGGATTCTCAGAGGGGAAATTGAAGCCTGGCTCCATGATTGAGAATGTTGGGGCTCAACAAGCCAAAGCCAAAGAAATAGCAGCAACAGCCAAGGTTGGTCTTGAGGGTCCTCATGATGCCAATGAAAGCAGACCAAGTCTTAATGGTTCTGCAAATAATAGTAATAGCACTGCACCAGCTACAAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAATTCATTGACTACTGCTTCAAAGAATGTTGAAGAAGTGGATGGAAAAGTGGGGTCTGGTGCACTGTTTGTGAAGGTCAGTATGGATGGTGCTCCTTATTTGAGAAAAGTAGACTTGAAGAATTACTCTGCATATGCAGAATTATCTTCTGCTCTAGAGAAGATGTTCAGCTGTTTCACCATAGGTCAATGTGGATCTCATGGAAATCTGGGCAGGGAGATGATGAATGAAACCAAGCTGAAGGATCTGCTTCATGGGTCTGAATATGTTCTTACATTTGAGGATAAAGATGGTGACTGGATGCTAGTGGGTGATGTTCCCTGGGAGATGTTTATTGATACATGCAAAAGGCTAAGGATCATGAAGAGCTCCGATGCCATTGGTCTAGCACCCAAAGCTGTTGAAAAAAATAAAAGCAGGAACTAG 1059 0.4344 MSRPLLGIGDEEGESNVTLLVSSSATVESVCLNGSKLKERNYMGLSSDCSSVDSSVPLPSFSDESKSNLNLKATELRLGLPGSQSPVRDSDLCLRSSTQFDEKPLFPLHPVTDDHHSSSKPAVLGNKRGFSDAMNGFSEGKLKPGSMIENVGAQQAKAKEIAATAKVGLEGPHDANESRPSLNGSANNSNSTAPATKAQVVGWPPIRSFRKNSLTTASKNVEEVDGKVGSGALFVKVSMDGAPYLRKVDLKNYSAYAELSSALEKMFSCFTIGQCGSHGNLGREMMNETKLKDLLHGSEYVLTFEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSSDAIGLAPKAVEKNKSRN. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01689 352 SUPERFAMILY CAD & PB1 domains 230 333 - -
Seca7g01689 352 MobiDBLite consensus disorder prediction 178 197 - -
Seca7g01689 352 Gene3D - 227 346 - -
Seca7g01689 352 FunFam Auxin-responsive protein 227 344 - -
Seca7g01689 352 ProSiteProfiles PB1 domain profile. 232 334 IPR000270 GO:0005515
Seca7g01689 352 MobiDBLite consensus disorder prediction 170 199 - -
Seca7g01689 352 Pfam AUX/IAA family 74 343 IPR033389 -
Seca7g01689 352 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 69 339 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01689 Seca-Chr7 33001598 33012716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01689 235 349 B3 DNA Binding Superfamily AT2G46530 33.043 1.88e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca7g01689 AUX_IAA 9.3e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01689 K14484 - gmx:100815447 567.77